Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2572 ATGCCCGAATCTCGGAAACAACCGGCTAATAGAGCGAAGCAAAGGCTTCATCACCCCTTGCAAGAGTCCAAAGCGATGAGAAAACTCCGCATAATATTCGGCGATCCTGATGCTACTGATTCATCCGAAGATGAGTCAGAGGTTATTATGAACCAGAGAAGGGTGAAAAGAAGCATTCGCGAGATCTCTCTTCCCCCTCTTCCTCTTGTCGTCACCTCCCCAGAAACAAGCTCTTGCGAAGTGAATAGCAACAACAATAGAGTCACGGCTTGCATTGAAGGTCAACCTCAGAACAAGAAGAGGGTTTTGACCCAAAACCCTTCAACGAGGAGACAAGGTTCTGGTAAATATAGAGGTGTTAGGCAGAGGAAGTGGGGTAAGTGGGCTGCAGAGATTCGTGACCCGTTTAAGAGTGCTCGGATCTGGCTAGGCACTTACAACACTGCAGAAGAGGCTTCTCAAGCGTATGAGGCCAAAAGGCTCGAATTTGAAGCCATGGCTAAAGCTCAAGCCTGTAAAAACGCTGCTACAATTGTACCATCGGTTTCAACTTCTGATAAGAGTAACTATTGTTCCTCTTCTGCTGCCGCTGTTTCTGCTGCTGCAGTGTCTGTGTCGGAGAAGTTTTCTACTACTTCCGAGGACTCAGAGTGTGTGTTGTCACACACATCTCCATCCTCCGTGCTCGAGTTGGATACCTCGGCTTCTAATTCGATTGTCAAGGGTAATGTTTCAAGCAACGAAGCTTTTGAGGCTAATGATTTGGTGGCTGAGCTGGCGGGGTTGGAGATACCCGATTTGAGTCTGTTGAACTTGCCTCCAACGTCCGATGCTGTTGTTTCTGCTTCATGTGGGTCTGAACCAAACCTTGGGTTTGATTTCGATTGGTTAACTTTTGATGATTATGGACAGGGTTTTGATGATCTTGGTGGCCTTGAGGATATCCAAATTTGTGGCTTTGATGACAATGAGCCGAGTGAGCTTCCTGATTTCGATTTTGGTGATTTTGGTGCTGATGAGTTTGCCGGTTGGACTGAGGAACCCCTCAATATACCTTGTGCCTAA 1065 0.4695 MPESRKQPANRAKQRLHHPLQESKAMRKLRIIFGDPDATDSSEDESEVIMNQRRVKRSIREISLPPLPLVVTSPETSSCEVNSNNNRVTACIEGQPQNKKRVLTQNPSTRRQGSGKYRGVRQRKWGKWAAEIRDPFKSARIWLGTYNTAEEASQAYEAKRLEFEAMAKAQACKNAATIVPSVSTSDKSNYCSSSAAAVSAAAVSVSEKFSTTSEDSECVLSHTSPSSVLELDTSASNSIVKGNVSSNEAFEANDLVAELAGLEIPDLSLLNLPPTSDAVVSASCGSEPNLGFDFDWLTFDDYGQGFDDLGGLEDIQICGFDDNEPSELPDFDFGDFGADEFAGWTEEPLNIPCA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2572 354 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Apr8g2572 354 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Apr8g2572 354 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Apr8g2572 354 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Apr8g2572 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 12 354 - -
Apr8g2572 354 CDD AP2 116 163 IPR001471 GO:0003700|GO:0006355
Apr8g2572 354 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 354 - -
Apr8g2572 354 ProSiteProfiles AP2/ERF domain profile. 116 176 IPR001471 GO:0003700|GO:0006355
Apr8g2572 354 SMART rav1_2 116 182 IPR001471 GO:0003700|GO:0006355
Apr8g2572 354 MobiDBLite consensus disorder prediction 1 23 - -
Apr8g2572 354 SUPERFAMILY DNA-binding domain 116 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2572 Apr-Chr8 35668816 35671472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2572 11 353 AP2-EREBP Transcription Factor Family AT1G68550 36.080 4.24e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g2572 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2572 - - gmx:102660769 479.174