Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2570 ATGAGTTCGGCTAAGAACGTGGCCAACGCGGTAGGTGGAAAAACCGCACGAGCATGTGATAGCTGCATAACAAAGCGAGCACGTTGGTACTGTGCTGCCGACGATGCTTTTCTCTGTCAAGCTTGTGACTCTTCCGTTCACTCCGCCAATCCATTGGCTCGAAGACACGAAAGAGTTCGCTTGAAAACGGCGTCGTTCAAGTCCGCTGAGGAACAACCCAATTGCGCTCCCTCGTGGCACACTAAGAAAGCTCGAACACCCAGACATGGGAAACACTCTCGTAACAACAACCACCACCACTTCCATTTGGTACCTGAAGTGGGCTCCGATGAAGTGAATTCCCATGAAGAGAACGAGGAACAGCTTCTGTACAGGGTCCCCATATTCGACCCCTTTGTGGGTGAGCTATGCAGTACTAGTCCTCCTTCTTCTGTGGCTGAAAGTGAGAGCAAAGGCACCAAAGGGAGCATGACCATGAGCCTGAGCAATGTTGTGTTGTTGGGTTGTGAGAATCACGAGATGGAAGGGTTGCATGGGTTGCTTCCTTCTGAGGTTGAGCTTGCTGAGTTTGCTGCTGACGTGGAGAGTTTATTGGGTAGGGGACTTGAAAACGAGTGTGTGGGGATGGAAGAGTTGGGGTTGGTTGATGCGAAAGAGGAGTGTTCGGTGGGTAGTGGGAAGGTGAAGGTGGAAGAGGAAGAGGGTCCGGCACAAGTGGCATCCAGAACCTGCAAGGTTGAGGCTGATGAGGTGGAGATGGTGGGAAGAGATCAGTCGTTTGAGTTTAGTTTTGATTATGACTCTCTTGAAACGTGTGAAGATGGAAAGGAGAAGGTTGGTGGTTTCGAATTGGGGAATGTCGATGGAGAATTGAAAGAGGAAGGTGAGGCAAAGAGGAAGAGGATTTCTTTGCAGCTTGATTATGATGCAGTGATCATTGCCTGGGCTAGCCATAAGTCTCCGTGGACCACAGGTCACAAACCAAATTTGGACCCTGACCAGTGTTGGCCTGAATGCATGGGAGCTTGTGGAACGGAACTTCATTATCCTTATGGTGAACTGGGTGGATTTGGGTGTCATCCAGTAATGATAGATGGAGGCAGAGAGGCAAGGGTGTCCAGATACAGAGAAAAGCGCCGAACGAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAGGGGAGGTTTGTGAAGAGGGCTTCCTTTGCAGCACCAACATTTCCTTTGCTAAATAAATAA 1272 0.4921 MSSAKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASFKSAEEQPNCAPSWHTKKARTPRHGKHSRNNNHHHFHLVPEVGSDEVNSHEENEEQLLYRVPIFDPFVGELCSTSPPSSVAESESKGTKGSMTMSLSNVVLLGCENHEMEGLHGLLPSEVELAEFAADVESLLGRGLENECVGMEELGLVDAKEECSVGSGKVKVEEEEGPAQVASRTCKVEADEVEMVGRDQSFEFSFDYDSLETCEDGKEKVGGFELGNVDGELKEEGEAKRKRISLQLDYDAVIIAWASHKSPWTTGHKPNLDPDQCWPECMGACGTELHYPYGELGGFGCHPVMIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLLNK* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2570 423 MobiDBLite consensus disorder prediction 82 98 - -
Apr8g2570 423 CDD Bbox1_BBX-like 18 61 - -
Apr8g2570 423 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Apr8g2570 423 MobiDBLite consensus disorder prediction 72 98 - -
Apr8g2570 423 SMART bboxneu5 14 61 IPR000315 GO:0008270
Apr8g2570 423 Pfam CCT motif 368 410 IPR010402 GO:0005515
Apr8g2570 423 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 416 - -
Apr8g2570 423 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Apr8g2570 423 ProSiteProfiles CCT domain profile. 368 410 IPR010402 GO:0005515
Apr8g2570 423 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2570 Apr-Chr8 35629301 35631361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2570 5 410 C2C2-CO-like Transcription Factor Family AT1G25440 47.183 3.44e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr8g2570 zf-B_box 8.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2570 - - vun:114190512 601.668