Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2546 ATGGCCACCACAAGCCTCTCTCGCCTCATTGTTCTCGTTATGTTTTTCCATTTTCTTCTTCTACTTCGAGGTTCCGCCAACCCGGATTTTGAAGCTCTCGTGGCCTTCAAAATCGCTTCAGACACATCAAAGAGGCTCACAACATGGAACACAAGCACCAACCCATGTGCCTGGACCGGCGTCTCATGCATCAGAGACAGAGTCTCGCGACTCGTTCTCGAAAACCTCGACCTCCAAGGCTCCATTCACCCCTTAACTACTCTAACTCAGCTACGGGTTCTGAGCCTTAAGGGGAATCGTTTTTCCGGTCCCGTTCCCAACCTCTCCAACTTCACCGCTCTGAAGCTTCTCTTCTTGTCTCATAACGACTTTTCCGGCGAGTTCCCGGCGACCGTCACGTCGCTCTTCCGCTTGTGCCGTCTCGATCTTTCCCACAACAACTTCTCCGGCGAGATTCCGGCGACGGTCAACCAGTTGACCCACCTCCTCACTCTCCGTCTCGACGAGAACAGATTCTCCGGCCACATTCCCGACGTGAACCTTCCCAGCTTGCAAGACTTTAACGTCTCCGGCAACCGCCTCTCCGGCGACATACCCAAGTCCTTGTCGGGCTTCCCCGAATCCTCGTTCGGGCAAAACCCGTTTCTCTGCGGAGCCCCAATGCATAAATGCGTGTCTGGGTCCAACCCAACTCAACCTGGATCCGAGGGTGCCATTGCTTCGCCATTGTTGCCGCGCGGCAACACCCCAACAACAACGGTTTCATCTTCGCCAAGCTCAATGCCGAGAACAACATCATCGAGTAATAAAGGCCACGAAAACGGCGGTTCGAAAATAAGTCCGGTGGCTCTTATAGCCATCATAGTCGGCGATGTTCTGGTCCTCGCCGTAGTGTCTCTGCTTCTGTATTGCTACTTCTGGAGAAACTACTCTGCGAAGTTGAAGGAGGGAAAAGGATCAAAGCTGTTTGAGAGCGAAAAGATAGTTTATTCGTCGAGTCCATACCCTGCTCAAGGAGGGTTTGAGAGGGGTCGAATGGTGTTCTTCGAAGGGGAGAAGAGGTTTGAACTGGAGGACTTGCTTCGAGCTTCCGCAGAAATGCTTGGGAAAGGAGGGTTTGGAACCGCATACAAAGCGGTGCTCGATGATGGCAATGTGGTTGCGGTGAAGAGGCTGAAGGACGCGCAGATTGCAGGAAAGAGGGAGTTCGAGCAGCACATGGAGGTTTTGGGAAGGTTAAGGCACCCCAACATTGTTAGTTTGAGGGCTTACTATTTTGCTCGCGATGAGAAGTTGTTGGTCTATGATTACATGCCCAATGCTAGCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCCGGACGAACCCCACTGGACTGGACCACGAGACTGAAGATAGCAGCTGGAGCGGCAAGAGGCTTGGCCTTTATTCACAACTCGTGTAAATCCCTTAAGCTCACCCACGGTAACATCAAATCCACCAACATCCTCCTAGACAAGCAGGGAAACGCAAGAGTGTCAGATTTTGGCCTTTCAGTGTTCGCGGGCCCCGGCCCAGTAGGTGGGAGATCGAACGGGTACCGTGCTCCGGAAGCATCGGATGGTCGAAAACAAAGCCACAAGTCTGACGTGTACTCTTTTGGTGTTCTCTTGCTGGAGCTGCTGACAGGGAAGTGCCCCTCGGTGGTGGAGAGTGGTGGGGCAGGGAGTGGGTACGGTGGGGTAGTGGACCTGCCGAGGTGGGTCCAGTCGGTGGTGAGGGAGGAATGGACGGCGGAGGTGTTTGATTTGGAGCTGATGAGGTATAAGGATATTGAGGAGGAGATGGTGGGGTTGCTCCAGATAGCCATGGCTTGCACTGCGCATGCGCCTGATCAACGGCCCAGGATCAGCCACGTGGTGAAGATGATTGAGGAGTTGCGTGGTGTAGAGGTGTCGCCGTGTCATGACACGTTGGACTCGGTGTCCGAGTCGCCGTCTTTGTCTGAAGATGCCTGTGGGACTAGTCAGTGA 2013 0.5385 MATTSLSRLIVLVMFFHFLLLLRGSANPDFEALVAFKIASDTSKRLTTWNTSTNPCAWTGVSCIRDRVSRLVLENLDLQGSIHPLTTLTQLRVLSLKGNRFSGPVPNLSNFTALKLLFLSHNDFSGEFPATVTSLFRLCRLDLSHNNFSGEIPATVNQLTHLLTLRLDENRFSGHIPDVNLPSLQDFNVSGNRLSGDIPKSLSGFPESSFGQNPFLCGAPMHKCVSGSNPTQPGSEGAIASPLLPRGNTPTTTVSSSPSSMPRTTSSSNKGHENGGSKISPVALIAIIVGDVLVLAVVSLLLYCYFWRNYSAKLKEGKGSKLFESEKIVYSSSPYPAQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRLRHPNIVSLRAYYFARDEKLLVYDYMPNASLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKSLKLTHGNIKSTNILLDKQGNARVSDFGLSVFAGPGPVGGRSNGYRAPEASDGRKQSHKSDVYSFGVLLLELLTGKCPSVVESGGAGSGYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTAHAPDQRPRISHVVKMIEELRGVEVSPCHDTLDSVSESPSLSEDACGTSQ* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2546 670 Gene3D Transferase(Phosphotransferase) domain 1 438 653 - -
Apr8g2546 670 SUPERFAMILY L domain-like 46 221 - -
Apr8g2546 670 Gene3D Phosphorylase Kinase; domain 1 342 437 - -
Apr8g2546 670 PANTHER - 24 656 - -
Apr8g2546 670 ProSiteProfiles Protein kinase domain profile. 362 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2546 670 ProSitePatterns Protein kinases ATP-binding region signature. 368 400 IPR017441 GO:0005524
Apr8g2546 670 MobiDBLite consensus disorder prediction 651 670 - -
Apr8g2546 670 SUPERFAMILY Protein kinase-like (PK-like) 366 637 IPR011009 -
Apr8g2546 670 MobiDBLite consensus disorder prediction 226 275 - -
Apr8g2546 670 CDD STKc_IRAK 368 640 - -
Apr8g2546 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 656 - -
Apr8g2546 670 MobiDBLite consensus disorder prediction 245 275 - -
Apr8g2546 670 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Apr8g2546 670 MobiDBLite consensus disorder prediction 648 670 - -
Apr8g2546 670 Pfam Protein kinase domain 366 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2546 670 Gene3D Ribonuclease Inhibitor 86 231 IPR032675 -
Apr8g2546 670 Gene3D Ribonuclease Inhibitor 24 85 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2546 Apr-Chr8 35382740 35385857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2546 29 670 Receptor kinase-like Gene Family AT1G68400 68.541 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr8g2546 Pkinase 3.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2546 - - gmx:100779158 1096.65