Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2539 ATGAAGCCTAAGTTGGTCTCAGATCTTTGTTGGATTGATAAGTTGGAATTCTTCGGTCAACGATTTGAATTTCTAACACGACAACCCTCTCAATTTCGTTTCACAGAGAAAATTACTGGCTGTTGTTTCTTTCAAGTCAATTGGCGTATTAAGCGGTTCAAAATGATAATGGTATATTTGGGAGTGGAAAGTTTAACGCTTCTGCTTGTTGTTTTAGCTCGTGATGGAAAGTGTCCAGCTTTCTTCAATTGTGGATTTCTTGGCCAGATCAAATTTCCTTTCACGGACACGCACAACCTACACTGCGGCGTATTGGCTATACGTGGCTGCGATGAACACAATCCATATGCTATCAAAACCATTCAACTAAATAACTCAACATCAACATTGTTCAATGTTTTACAGGTTGCACCTCGTACCATAACGATCAGAGATGAGCAGCAACAAAATTATTTGCAAAACAAAAGTTGCCAAGCCTTCACCAACAAAATTACCGGGATATTGCCTCACACCTCTCCTTTGGCTTCTTTCTACATCAAATATAATATCACTATCTTCAGATGCAATCACTTCCATAGTGTCACCCCTCCCAAATTTTATAAATATTCAAACTGTTCTCAGTACGATATCTATTATGGTCCTCCAAATATTGGAAATCTTCTGGATTTCAAATGGCCCAAATCTTTAGCACCTTGTTCAAAGAATCAGCTTCCAATAATGGACAACCCTGCTGCTGCCGACCCCTTTAAATTTCTGACTCATATTATATCTATTGAAATAAAATTATCTGAAGATTGTGAAAAGTGTCTTGGTCACAGAAGAGGCCAATGTCAACTTGACAGTAAAGGAAAATTCTACTGCGCCAAAGGTATTGGTATTGGACTCCCTGGCATTATTATAACTGCGCTGCTGATTATTTGGCGCTACAAACGAAAATGTGTTCATTTCTATTCAAATCCAAACGCAGAGAGTGCAGCCAGTGTCTACCTTGGGGTCCCGATCTTCACGGATAATGATCTTGAAGTTGCAACTAAAAATTTTGATCAATCAAGAGAAGTAGGAAAAGGAGGATTTGGGGTTGTTTACTATGGAAAACTCCACGATGGACGTGAAGTTGCTGTGAAGCGCCTACATGAACACAACTATAGGCGCGTAGAACAATTCATGAATGAAATCAAGATCCTCACTCGCTTGCGCCACAAAAATCTAGTGTCATTATATGGCTGCACATCACGTCACAGCCGTGAACTATTGCTTGTCTATGAATACATTTCAAATGGGACTGTTGCTAGCCACCTCCGTCACGAATCAACAAATCCTGGGTTTTTGGGATGGCCCATCCGAATGAAAGTGGCCATAGAGACTGCCACTGCATTGGCTTATCTCCATGCCTCTGACATTATTCATCGTGACGTGAAAACAAACAACATTCTCCTTGACAACACTTTTTGTGTTAAAGTTGCTGATTTTGGATTGTCAAGAGTGTTCCCTAGTGATGTCACCCACGTTTCCACAGCTCCACAGGGAACTCCTGGTTATGTGGATCCTGAATATCACCGATGCTATCAGCTCACAAGCAAGAGTGATGTTTATAGCTTTGGGGTTGTCCTTATTGAGCTTATATCATCTATGCCTGCTGTTGATATGACTCGACATAAGGATGAGATTAACTTGGCAGATTTAGCTATTAGGAAGATTCAAAAAAGTGCAATTGGTGAGTTGGTGGACCCTTCCCTTGGTTTTGAGTCAAATAGTGATGTTAAAAGGAAAATAACTTCAGTAGCCGAATTAGCTTTTCTTTGCTTGCAACGAGACAAAGAGTTGAGACCCTCCATGGATGAGGTTTTGGATGTGCTGAAGAGAATTGAAAGTGGGAAGGATGAGGTTGGTCATCTAGAGAACATTTCACCACCTTCACCGGATCATGATGAGGTGAAATTGTTGAGGAATGTGAAGTTGGCACCTTCGCCAAAGGCTGTAACAGATAAATGGGATAGCAAATCAACTGGTTCTAATGTAAGTGGTCAATCGTCAAGCCAAATCTAA 2046 0.4066 MKPKLVSDLCWIDKLEFFGQRFEFLTRQPSQFRFTEKITGCCFFQVNWRIKRFKMIMVYLGVESLTLLLVVLARDGKCPAFFNCGFLGQIKFPFTDTHNLHCGVLAIRGCDEHNPYAIKTIQLNNSTSTLFNVLQVAPRTITIRDEQQQNYLQNKSCQAFTNKITGILPHTSPLASFYIKYNITIFRCNHFHSVTPPKFYKYSNCSQYDIYYGPPNIGNLLDFKWPKSLAPCSKNQLPIMDNPAAADPFKFLTHIISIEIKLSEDCEKCLGHRRGQCQLDSKGKFYCAKGIGIGLPGIIITALLIIWRYKRKCVHFYSNPNAESAASVYLGVPIFTDNDLEVATKNFDQSREVGKGGFGVVYYGKLHDGREVAVKRLHEHNYRRVEQFMNEIKILTRLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVASHLRHESTNPGFLGWPIRMKVAIETATALAYLHASDIIHRDVKTNNILLDNTFCVKVADFGLSRVFPSDVTHVSTAPQGTPGYVDPEYHRCYQLTSKSDVYSFGVVLIELISSMPAVDMTRHKDEINLADLAIRKIQKSAIGELVDPSLGFESNSDVKRKITSVAELAFLCLQRDKELRPSMDEVLDVLKRIESGKDEVGHLENISPPSPDHDEVKLLRNVKLAPSPKAVTDKWDSKSTGSNVSGQSSSQI* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2539 681 SMART serkin_6 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2539 681 MobiDBLite consensus disorder prediction 657 681 - -
Apr8g2539 681 Pfam Protein kinase domain 348 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2539 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Apr8g2539 681 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 64 681 IPR044652 -
Apr8g2539 681 ProSiteProfiles Protein kinase domain profile. 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2539 681 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 64 681 - -
Apr8g2539 681 SUPERFAMILY Protein kinase-like (PK-like) 325 619 IPR011009 -
Apr8g2539 681 MobiDBLite consensus disorder prediction 662 681 - -
Apr8g2539 681 Gene3D Phosphorylase Kinase; domain 1 318 423 - -
Apr8g2539 681 Gene3D Transferase(Phosphotransferase) domain 1 424 631 - -
Apr8g2539 681 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2539 Apr-Chr8 35323962 35327364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2539 82 675 Receptor kinase-like Gene Family AT1G25390 47.771 2.69e-161 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Apr8g2539 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2539 - - aprc:113871893 1335.09