Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2518 ATGCATAATAAGGACGCTTGTTCCCCCTCCTCCAACGGCGGATTTGGCGCCACCGCCGCCAGTCAAATGCCGTCAAACGGCAACGCCTATAGTTCATTGTACGCCGCTTTGTCGAACGAGAATATTCCGTCATTCTCAGCAAACTGCAGCAACGGTGGCGGCGTCTCGCTGTACCCGTACTCTGACTCCACTCAGTACGACTCGTGCGTTATTCAGAAGCACCAGGATATGGTGAACCGTCACAGCATGTGCCTCAGTCGCCTCGTGGAAACTTCCAAAGAGGTCGAAGCTCTTCGGCAAGAGAATGGCCAGCTCCGTGCTGTGAACAAGGAACTTCAGAAGCAGCTGAACCTCCTCATTCAGGCTTCGCTAGAGAACCAATTCGGCGGCGGCGGCGGCTCCTCCGGCCAGACGCAAACGACGCCGTTTGATGTCGTGCATGGGTTCCGCGGATTTCACATTGGGGAGGGGAAAGAGAACTGCGCCGATTGGAATCACAATAACAACAATAATAACAATAGTAATAACAGCAATAATAATAAGGAGCTGCAGGAAATTTCGGACGAGAGTCCAACAAGCGTGATTGAGAATAACGGTGTTGAGTTGGAGAGGTTCTCTCTTCCTAAGAGCATATCTGTGAGGTCGAATGGCTACTTGAAGATGGCTCAGTCTGCGGCTCTTGCCAGCAATAATGCCTCTCGCAACAAGGGCGCTACTCGCCCACGCACTTCCTCCGCTCCGCCTGAAGCCCAGAAGGTATATGTACGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAAATGGTAGTGTATAATCAAGGAATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACTGGCACATGCCCATATGGAGACCACTGCCAATTTGCTCATGGCATTGGGGAGCTTCGCCCTGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTATGCCCATATGGCCATAGATGCCATTTCCGACATGCACTTACTGAACAAGAGAAGGCTGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1077 0.5153 MHNKDACSPSSNGGFGATAASQMPSNGNAYSSLYAALSNENIPSFSANCSNGGGVSLYPYSDSTQYDSCVIQKHQDMVNRHSMCLSRLVETSKEVEALRQENGQLRAVNKELQKQLNLLIQASLENQFGGGGGSSGQTQTTPFDVVHGFRGFHIGEGKENCADWNHNNNNNNNSNNSNNNKELQEISDESPTSVIENNGVELERFSLPKSISVRSNGYLKMAQSAALASNNASRNKGATRPRTSSAPPEAQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVSQPKPRTMKLER* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2518 358 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Apr8g2518 358 PANTHER CCCH ZINC FINGER/TIS11-RELATED 51 350 IPR045877 GO:0003729
Apr8g2518 358 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Apr8g2518 358 SMART c3hfinal6 312 339 IPR000571 GO:0046872
Apr8g2518 358 MobiDBLite consensus disorder prediction 228 251 - -
Apr8g2518 358 MobiDBLite consensus disorder prediction 228 246 - -
Apr8g2518 358 SUPERFAMILY CCCH zinc finger 271 306 IPR036855 GO:0046872
Apr8g2518 358 MobiDBLite consensus disorder prediction 163 191 - -
Apr8g2518 358 Gene3D - 269 307 - -
Apr8g2518 358 Gene3D - 308 344 - -
Apr8g2518 358 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 51 350 - -
Apr8g2518 358 SUPERFAMILY CCCH zinc finger 308 342 IPR036855 GO:0046872
Apr8g2518 358 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 300 IPR000571 GO:0046872
Apr8g2518 358 Coils Coil 88 122 - -
Apr8g2518 358 ProSiteProfiles Zinc finger C3H1-type profile. 312 340 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2518 60 347 C3H Transcription Factor Family AT1G68200 52.218 2.89e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr8g2518 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2518 K18753 - gmx:100819250 552.747