Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2517 ATGGGTTTGCAAAACCAATTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTGTTGGCGCACATAGCCACCTGCGTCAACTACCTCCGCTCCATGCTCCTCGCTCTCCTCCAATCACTCGGTCTCTCCAGATTCCACACCGACCAGATCGTCGACGACAGCTTCTTCGCCGCCGTCGGATCCGGCCTTGCCGGACTCATCATGCTCTCCGATCAGCTAACCCTCAACAACCAATTCTTCTACAACGGCACCGCCGACCACGACTGCGTGGTGTGCCAGACCACTTTCAACGACGGCGACCACGTTCGCATGCTTCCCTGTCGCCACGTCTTCCACCGCCGATGCTTCGATGGCTGGCTCCACTACAACTTCAACTGCCCCCTTTGCCGGTCACCACTTTTCTCCGATGAGCGCGTGGCTCTCACGGAGCGTCGCCTCGGTCGCCAACTCGTCTCCTGGTTCTCCCTCAGCTGA 477 0.5912 MGLQNQLNDVSSGSIPLLVLAHIATCVNYLRSMLLALLQSLGLSRFHTDQIVDDSFFAAVGSGLAGLIMLSDQLTLNNQFFYNGTADHDCVVCQTTFNDGDHVRMLPCRHVFHRRCFDGWLHYNFNCPLCRSPLFSDERVALTERRLGRQLVSWFSLS* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2517 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 140 IPR013083 -
Apr8g2517 158 SUPERFAMILY RING/U-box 89 137 - -
Apr8g2517 158 SMART ring_2 90 130 IPR001841 -
Apr8g2517 158 Pfam Ring finger domain 89 131 IPR001841 -
Apr8g2517 158 ProSiteProfiles Zinc finger RING-type profile. 90 131 IPR001841 -
Apr8g2517 158 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 156 - -
Apr8g2517 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2517 1 157 C3H Transcription Factor Family AT1G15100 50.617 2.41e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2517 K16282 - gmx:100803789 264.233