Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2476 ATGTTAGGTTCATTGCCTATATTGCCTCTTCCTGCTCCTCCTTCTGATGGAAATCTAGGTCCTCTCCCTGAGGCTCAACTCTCTGAGAATGAGAGGGATGAGAAATTCTCTAACGAGGAGCAGAAAAATTTAGCTTCTGTTCCGGTACCGGCAACAGTTGCCACCCACACTAGAACTATTGGAATTATACATCCCCCTCCTGACATTAGAACCATTGTTGATAAAACTGCCCAGTTTGTGGCTAAAAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACCGGCAATGTCAAGTTCAATTTCTTGAACTCATCAGATCCTTATCATGCGTATTACCAACACCGGTTGACTGAATTTCGTGCTCAGAATCAGTCTTCTTCACTGCAACCTCTGTCGCTGCCTGCAGATTCAGCTATTCCTGAATCTGTCCCGTCTGCACCAACGCCTGATAGTAATGGTGTAGTAGCAGCAGAAAAGCCTGATGTTTCTGCCCAGTTTAAACCTGTAAGGAAAGTACTTGAACCCCCTGAAGCCGAGCAGTATACTGTTAGGCTTCCTGAAGGAATTACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAGTTTGTGGCCCGAAATGGGAAATCTTTTTTGACAGGCTTGACAAGTAGAGAAGTTAACAACCCCCAATTCCATTTTTTAAAACCAACCCACAGCATGTTTACATTTTTTACTTCCCTTGCTGATGCATATTCAAAGGTTTTGATGCCTCCAAAGGGTTTGACAGAGAAGCTGAAGAAGAGTGTCTCTGACATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTGGAATGGGAGCGTTCACAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAGCAGGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGATTTTGTTGATGATGAGGATGAAGAATTACCTCCTCCAATGACTATTGAGGAGGTTATAAGGAGAAGCAAGATGACAGCCATGGAAGAGGATATTGTTGAGCCAGGAAAGGAGGTTGAAATGGAAATGGATGAGGAAGAGGCCCAGCTTGTTGAAGAGGGCATGCGAGCTGCTAGTTTGGAAGATAATGATGATGGGAAGCAAAATGAAGTGAGGGTTACTGAAGATCCTGAACCACCAATGAGGATTGTGAAGAACTGGAAGAGACCTGAGGAGAGGATTCCTGCAGAAAGAGATCCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTAATTCCTATTAGTGAAATGTCGGAACATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAGACAACTCTGGCTGCGGATGATGAAATCTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATCTTTGGTACTACGGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAGATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACACTGGTAGCATTGGCCGCACTGCAAACCAAGCCATGTCACAGAATATTGGAGGTGAGGATCCAAATGATGCTTCTAATAATGAAATCAAGAACCTTCTTGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTTAGTTCGTCCTCTTCCACCACCACCTGGACTGGCATTGAATCTTCCCCGTGTTCCTGTCCAATATTCTGCTCCTAATAGTGGTGCCCTTCCAATTCCTCCTCCCAGACCCCCAGTCGTTCCCATGATTTCTTCTGTTCGGCCAGCTCCCCCTCCTCCAATGCCAATGACTTCTGGACAGCAGCCAGTCATGGCTGGTCAACCGCCCCCAATGCATCCATCAATTCCTATGAATAGCCAAGGAATTCCCATACCTCCACCACCAGGATCTCAGTTTACTCCTGTTCCAGTTCCTCGACCTTTTGTTCCTCTTTCTGTTCCACCATCAGGTATGCCTATGATGCATCCACCACCTTTGCCTCAAGGAGTGCCACCGCCACCTCCACCAGAGGAAGCTCCTCCCCCTCTCCCAGATGAACCGGAACCAAAGAGGCAGAAGCTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCCCAACATCCGGGACCTGTTCGCATCAGCATATCTGTTCCTAATGTTGACGAAGGAAATCTCAAAGGACAAGTTCTGGAAATTACAGTTCAATCTTTGTCTGAAACTGTTGGCAGTCTAAAGGAAAAAATTGCCGGGGAGATACAGCTTCCAGCTAACAAACAGAAACTGAGTGGAAAACCAGGCTTTCTCAAGGATAACATGTCACTTGCCCATTACAACGTTGGTGGAGGAGAAACACTTGCCCTCACCTTAAGAGAGCGTGGTGGTAGAAAGAAATGA 2442 0.4541 MLGSLPILPLPAPPSDGNLGPLPEAQLSENERDEKFSNEEQKNLASVPVPATVATHTRTIGIIHPPPDIRTIVDKTAQFVAKNGPEFEKRIIANNTGNVKFNFLNSSDPYHAYYQHRLTEFRAQNQSSSLQPLSLPADSAIPESVPSAPTPDSNGVVAAEKPDVSAQFKPVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFVDDEDEELPPPMTIEEVIRRSKMTAMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDDGKQNEVRVTEDPEPPMRIVKNWKRPEERIPAERDPTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQNIGGEDPNDASNNEIKNLLGPAAPPPRPGMPLVRPLPPPPGLALNLPRVPVQYSAPNSGALPIPPPRPPVVPMISSVRPAPPPPMPMTSGQQPVMAGQPPPMHPSIPMNSQGIPIPPPPGSQFTPVPVPRPFVPLSVPPSGMPMMHPPPLPQGVPPPPPPEEAPPPLPDEPEPKRQKLDDSALIPEDQFLAQHPGPVRISISVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVGGGETLALTLRERGGRKK* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2476 813 PANTHER SPLICING FACTOR 3A, PROTEIN 7 118 - -
Apr8g2476 813 PANTHER SPLICING FACTOR 3A, PROTEIN 165 813 - -
Apr8g2476 813 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 165 813 IPR045146 GO:0003723|GO:0045292
Apr8g2476 813 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 118 IPR045146 GO:0003723|GO:0045292
Apr8g2476 813 SUPERFAMILY Ubiquitin-like 706 811 IPR029071 -
Apr8g2476 813 Gene3D Surp module 56 129 IPR035967 GO:0003723|GO:0006396
Apr8g2476 813 Pfam Ubiquitin family 741 808 IPR000626 GO:0005515
Apr8g2476 813 MobiDBLite consensus disorder prediction 697 712 - -
Apr8g2476 813 ProSiteProfiles SURP motif repeat profile. 72 114 IPR000061 GO:0003723|GO:0006396
Apr8g2476 813 SMART surpneu2 196 249 IPR000061 GO:0003723|GO:0006396
Apr8g2476 813 SMART surpneu2 70 123 IPR000061 GO:0003723|GO:0006396
Apr8g2476 813 PRINTS Proline rich extensin signature 553 569 - -
Apr8g2476 813 PRINTS Proline rich extensin signature 587 599 - -
Apr8g2476 813 PRINTS Proline rich extensin signature 609 630 - -
Apr8g2476 813 PRINTS Proline rich extensin signature 644 660 - -
Apr8g2476 813 PRINTS Proline rich extensin signature 665 682 - -
Apr8g2476 813 PRINTS Proline rich extensin signature 683 708 - -
Apr8g2476 813 Gene3D Surp module 191 249 IPR035967 GO:0003723|GO:0006396
Apr8g2476 813 Coils Coil 282 302 - -
Apr8g2476 813 ProSiteProfiles Ubiquitin domain profile. 754 810 IPR000626 GO:0005515
Apr8g2476 813 SMART ubq_7 734 806 IPR000626 GO:0005515
Apr8g2476 813 SUPERFAMILY Surp module (SWAP domain) 48 125 IPR035967 GO:0003723|GO:0006396
Apr8g2476 813 MobiDBLite consensus disorder prediction 673 696 - -
Apr8g2476 813 Gene3D - 702 812 - -
Apr8g2476 813 MobiDBLite consensus disorder prediction 1 45 - -
Apr8g2476 813 MobiDBLite consensus disorder prediction 125 155 - -
Apr8g2476 813 ProSiteProfiles SURP motif repeat profile. 198 240 IPR000061 GO:0003723|GO:0006396
Apr8g2476 813 SUPERFAMILY Surp module (SWAP domain) 174 248 IPR035967 GO:0003723|GO:0006396
Apr8g2476 813 Pfam Surp module 196 247 IPR000061 GO:0003723|GO:0006396
Apr8g2476 813 Pfam Surp module 70 121 IPR000061 GO:0003723|GO:0006396
Apr8g2476 813 Coils Coil 360 380 - -
Apr8g2476 813 MobiDBLite consensus disorder prediction 673 713 - -
Apr8g2476 813 CDD Ubl_SF3a120 726 806 IPR035563 -
Apr8g2476 813 Pfam Pre-mRNA splicing factor PRP21 like protein 265 479 IPR022030 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2476 741 810 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 7.30e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2476 K12825 - gmx:100790309 1274.61