Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2469 ATGGATTCTGTGCCTTCTGATGTGTCTAATTCACCTCCTATTAAAGATCCATCCACTTCACCTCCTGCCAAAGAAACTGATGAAGAAGTTTCTGCTACTGTAGTCTCTGGGCAAGATAATTCTGCACATGAGTCATCATCAAGGTCATCTCCTACTGGCATATCAACTTGGGCAAAAAACTTGAAAATTTCTCACTCATTTTCTGGTTCCCAAGACGACTCACCAGGTGGAAATGTTGGGAAATCAACTTTTGCACGCATCACTAGTAATTTGGGATTGCGATTGTCTCCTAAATCTCCTGTTTCAGATGACAGTTCCAATGAAACAGCCGTACAATCTAATTTATTTGGAACGATCACGAAAGGCCTTGTTGACTCCTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCTCGACATGTTGTTTCACAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGTTATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGGTAAATACAAAGTATATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGAAAGGTGGCTAGCTTCCCATTTGATGACCACAATTGCCCACCAATTCAACTGATTATATCATTTTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACAGGATTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAATCGATGGATTACTATAATCAGAAAAGATGTATTGATGGAAAGGGACTTGTTCTACCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCATGACTTACTTTAATGGAGAAAACCCACCTCCTCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTATTGGATTAGGCCTTCTATAACTGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTCAGTGCACCAAAGAAGGGAGTTATGGTCTTTGCTTTGCCAGGAGAGCCTGGTCTTACAGAATTGGCTGGGGACTTCAAAATCCATTTTCATGACCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAGTACTGAACACCGGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTTATGGTTGAGGTTGTGCTCGTTGATTACAATGGTGATGTTGTAACTTCCAAAGCTGAAACTACTACAAAGAAATCTGATGAGAGTTCAAGTAACAAACCCGCCCAAGGGGAAATCAGCACCCCTTCACAGAATGCAGACAGAGAATCAGGGAGTCATGATAAAGATGATGTGTTTTCAGATGGCGAGGCAGAGCAATCCGGTTCTTCGAAAAACAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACGGTTGCAAAAGACACCAGAGAGTCCGAGTCAAACAGAATTTCCAATCAAATCGCCAATTTATCACAAGCAACAGAACAAGTTGCCTTGGGAAACAAGAGCTCGACTCCAATTCATAGTGGTGGGGAGCCGAAAAGTAATGATGGAAGAACAGTGTCCAGTCTGGAGGTGCCCAGCGCAGAAAGTGAGTTCAAGGCCATGGCTGCAGATGCTTCTGTTTTTACGTTCGGAGATGACGAAGACTACGAAAGTGATTGA 1857 0.4152 MDSVPSDVSNSPPIKDPSTSPPAKETDEEVSATVVSGQDNSAHESSSRSSPTGISTWAKNLKISHSFSGSQDDSPGGNVGKSTFARITSNLGLRLSPKSPVSDDSSNETAVQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERVMTYFNGENPPPRRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLLPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLVDYNGDVVTSKAETTTKKSDESSSNKPAQGEISTPSQNADRESGSHDKDDVFSDGEAEQSGSSKNKQTKAPSEAVETVAKDTRESESNRISNQIANLSQATEQVALGNKSSTPIHSGGEPKSNDGRTVSSLEVPSAESEFKAMAADASVFTFGDDEDYESD* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2469 618 MobiDBLite consensus disorder prediction 468 591 - -
Apr8g2469 618 MobiDBLite consensus disorder prediction 31 54 - -
Apr8g2469 618 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Apr8g2469 618 MobiDBLite consensus disorder prediction 478 497 - -
Apr8g2469 618 MobiDBLite consensus disorder prediction 498 512 - -
Apr8g2469 618 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Apr8g2469 618 MobiDBLite consensus disorder prediction 513 529 - -
Apr8g2469 618 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Apr8g2469 618 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 18 618 - -
Apr8g2469 618 MobiDBLite consensus disorder prediction 545 591 - -
Apr8g2469 618 SMART PTEN_C2_2 331 459 IPR014020 -
Apr8g2469 618 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Apr8g2469 618 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 18 618 - -
Apr8g2469 618 MobiDBLite consensus disorder prediction 1 54 - -
Apr8g2469 618 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Apr8g2469 618 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 329 IPR029021 -
Apr8g2469 618 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2469 Apr-Chr8 34698471 34705536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2469 36 618 Protein tyrosine phosphatase (PTP) family AT3G19420 68.729 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2469 K01110 - gmx:100784003 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2469 8 34698471 34705536 Apr8g2469 8 34698471 34705536 ECH
Apr7g0882 7 15846303 15853000 Apr8g2469 8 34698471 34705536 PCT