Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2440 ATGATGATCAAGGAAGATGAAACAACTCTTACAACAGCCCAAGAACAACCAGGTGAAGTGATGAATGAAGACAAGAACAATTATGGAAGCGAGGATGACAATCCCCAAGAGTGGTTGAACCTGAGCTTAGGAGGAACTTCACTCTCAACAGCAGGAGACCCTGATTCACAATCAAGACCAGCCACTGCTAAAGTTTTTTCATGCAACTTCTGCATGAGGAAATTCTTCAGTTCGCAGGCATTAGGGGGTCATCAGAACGCCCACAAAAGGGAAAGAGGTGCTGCCAGAAGATACCAATCTCAGAGGTCCATGGCAATAATGGGCTTCTCCATGAACACACCTATGCTTCGATCGCTAAGTGTACAGCCCCATTCACTTGTGCACAAGCCATGCAGAGGTGGTGGTACTATGGTGGCACCCAGCTTTCATGATGCACATGCAAGGCTTGGAATGGCATGGACACCTTTCTTGTCTGAGGATCAAACGGATCTGGTGTGGCCAGGAAGCTTTCGCTTGGTTCCACAACAGCCCCAGCCACCACAGGAGTCACTCAAGCTTGATTTAGACCTCAGACTCTAA 579 0.4801 MMIKEDETTLTTAQEQPGEVMNEDKNNYGSEDDNPQEWLNLSLGGTSLSTAGDPDSQSRPATAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQRSMAIMGFSMNTPMLRSLSVQPHSLVHKPCRGGGTMVAPSFHDAHARLGMAWTPFLSEDQTDLVWPGSFRLVPQQPQPPQESLKLDLDLRL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2440 192 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Apr8g2440 192 Gene3D Classic Zinc Finger 53 112 - -
Apr8g2440 192 MobiDBLite consensus disorder prediction 32 59 - -
Apr8g2440 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Apr8g2440 192 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 192 - -
Apr8g2440 192 MobiDBLite consensus disorder prediction 1 59 - -
Apr8g2440 192 MobiDBLite consensus disorder prediction 7 23 - -
Apr8g2440 192 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Apr8g2440 192 PANTHER ZINC FINGER PROTEIN 4-LIKE 5 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2440 Apr-Chr8 34510059 34511280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2440 53 180 C2H2 Transcription Factor Family AT1G24625 40.458 1.23e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2440 - - gmx:100811125 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2440 8 34510059 34511280 Apr8g2440 8 34510059 34511280 ECH