Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2438 ATGAGACAAGGACGGATCTACGGTGTTTATAGTTTGGTGAGTTCGAACGGTGGCCCAGATTTGGAGGAGAGCGTAAACGAAGCACCGTTTTTTCCTCTCTTTGGCGCTGAGATTAAGAAAAGGGGACTCTCACGAAAACTTAACTCTTTCTCTCTCCCTCACCCCATTTTAGATCGAACCCTTCTTCCTCCTCGCACCGCCCTTCCCATTCGCTGCGGATATGACTGTGCTACTCACACCCACAACTTATTAGCTTTGCATTCTGATGATGGTGGTGGATGCTGTGGCCATGTGTGTTTCCTCGTACCAATGACTAGTTCGAGCCATAATAACAGTACGACTGAACAGATGGGAAGTGAACAGTGTGATTTGTCTGAAAAAAAACCTCAGATAAGCTCTGGATGCTTAGACAGCAAACAGAGGGAGCTTGGTACAGTGTTAAACAATTCAGTAATTGACGAAAAATCAAATCACATTTCTGCCAATGTGACTGAGAATTCTGTTATTCAACTGCTTGCTCCACCTCAGCATGACTTAGATAAGAGTCGTCAGATTGTAGAAGGTCCATGCCTTCAACGAAGTACCATTGAACAAGTCTCTATTAATTTATCTAATGATAAACCAGAAAACAAATGCCAACCATTGTGTGAAAATATTCAAACTCAGCCTGTAGAAATAAATGATGCAGTAAATGCCTTTGTTGTTGAAGACCAAATGCAATCCATTGCAGCCGAAGGTTCATGCCTTCAACAAAGTACCATTGAACAAGTCTCTGTTCATTTAGATAATGATAAGCCAGAAAATGAATGCCAAGCATTGTCGGAAAATGTTCAAACTGAGCCTGTAGAAATAAACGATGCAGCCTTTGTTGTTGAGGATCAAACACAATCCATTCCTGTAGAAGGTTCATGCCTTCCACAAAATACCATTGAACAAGTCTCTGTTCAATTATTTAATGATAAACCAGAAAACGAGTGCCAACCATTGTCTGAAAATGTTCAAACTGAGCCTGTAGAAATAAACGATGCAGCCTTTGTTGTTGAGGATCAAACACAATCCATTCCTGTAGAAGGTTCATGCCTTCCACAAAATACCATTGAACAAATCTCTGTTCAATTATTTAATGATAAACCAGAAAACGAGTGCCAACCATTGTCTGAAAATGTTCAAACTGAACCTGTAGAAATAAATAATGCAGTAACTTCCCTTGTTGTTAAGGACCAAACACAATTCTTTTCTGCTCAAGTGAACACGAGTTCTGTGAATGAATTGTTGGGTCCTCCTTCTGGAAATGTTGCAAAAAATATTAGTTTCAATTGTTCAGAAAGAAAACCCAATAGCACAACTCATTCAAGACTGAGGCACAGGGGTAAAAGAAACTCAAAATTATTGAAGAAGAAGTATATGCTAAGGTCATTAGGAAGCAGTGACAGAGCTTTGCGGTCAAGAACAAGAGAAAAACCTAAAGCACCTGAACCAAATAGTAATTTGGTTGATGGTAATAATGATGGAGTGAAGAGGAAAAGTGGGAGGAGGAAGAAAAAGAGAAGAGAGGATGGAATTACTGATCAGTTTTCTAGAATCAGAACTCACTTAAGATATTTATTGAACCGAATAAGCTATGAGAAAAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGTATGGAAAAATTAAAGCCTGAGAAGGAGCTTCAGCGGGCTAAGTCTGAAATTCTTCGACGTAAATTGAAAATTAGGGATCTATTTCGAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTTCCAGAATCTCTGTTTGATTCTAAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCAGTCCAAAGAGTTGAGCACTAATAATGATATAATTCTATGTGATGGTGTTTGTGACCGTGGATTTCACCAGTTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGTGATGAGGGTTGGTTATGCCCAGGATGTGAGTGCAAAGATGACTGCATCGAACTTGTTAATGACTCATTAGGATCAAGTCTCTCTCTTAGTGACACCTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAATAATATGGATAGCAACTTGGGACTTCCTTCTGACGATTCGGATGATGATGATTATAATCCTAATGGTCCAGAGGATGTGGAAGTTGAAGGAGATGAGTCAAGTTCCGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGCAGAGTTCACATGAGGATCAATACTTGGGCCTTCCTTCTGAAGACTCTGAGGATGATGATTATGATCCTAATCGTGCAGATGTTGACTGTAAAATTGCTGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCCGAGGATCTTGCTGCAATTCAGGATAAGAGATCTCCTGGACAGGACGAAGACATTGTATCTGTATCTTTGGATGATGTTAAGAATTTGAAAGGTTCTGGCAAACAAAAGGGTAAAGTTGATAAAAAGCCATCAATGGCTGATGAACTGTCATCTTTACTAGAGCCAGATCCTGGCCAAGAGGGTTCCACTCCTGTTTCTGGGAAAAGACATGTGGAAAGGTTGGACTACAAAAGGCTGTATGATGAGACGTACCGGAGTGATACTAGTGAGGATGAAGATTGGACTGCCACTGCTACTCCAAGTAGTAAAAAGAAACTCACTGCCAATGTGACTTTGGTGTCACCAAATGGAAATGCTTCAAATAATCCTAGACATACTCCTATGAGGAATACCCATCAGAATAGAGCTGAAAATACAGATAATTCACCCGCCAAATCAGTTGACAGCTGTGTGAAATATGATTCCAGGGATAATAAGTCTGGATCTTCAGCATACAAAAGAGTGAAAAGACTTGGAGAAGTTGCACTGCAGAGGCTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATCGAACTACAAAAGAAAGCTTGGCACAAGAACTAGGAATTACTTTTCAGCAGGTTGCCAAATGGTTTGACAATACACGCTGGAGCTTCCGGCATTCATCACAAATGGAAAGCGATCCTGGAAAAAATATTTTGTGGCTGGGCAATGAAGGCAAAGCCAAAAATGAGGGGGAGAGGAAATGTGAATTAATGTCCCCAGAGGTCAGTGGAGAAAATTCAAAATCCTCGAGTTATAGAAAAAGGAAGCATTTGTCTGAATCCCAAGCATCTGAAACACAGCTGGATATTGATGGCTCAGCGACAAGCACACCAAATGCTCATGAAATACAAATAGGCAATAAAATGAAGACGAGGAAGAGGAAATGA 3321 0.4035 MRQGRIYGVYSLVSSNGGPDLEESVNEAPFFPLFGAEIKKRGLSRKLNSFSLPHPILDRTLLPPRTALPIRCGYDCATHTHNLLALHSDDGGGCCGHVCFLVPMTSSSHNNSTTEQMGSEQCDLSEKKPQISSGCLDSKQRELGTVLNNSVIDEKSNHISANVTENSVIQLLAPPQHDLDKSRQIVEGPCLQRSTIEQVSINLSNDKPENKCQPLCENIQTQPVEINDAVNAFVVEDQMQSIAAEGSCLQQSTIEQVSVHLDNDKPENECQALSENVQTEPVEINDAAFVVEDQTQSIPVEGSCLPQNTIEQVSVQLFNDKPENECQPLSENVQTEPVEINDAAFVVEDQTQSIPVEGSCLPQNTIEQISVQLFNDKPENECQPLSENVQTEPVEINNAVTSLVVKDQTQFFSAQVNTSSVNELLGPPSGNVAKNISFNCSERKPNSTTHSRLRHRGKRNSKLLKKKYMLRSLGSSDRALRSRTREKPKAPEPNSNLVDGNNDGVKRKSGRRKKKRREDGITDQFSRIRTHLRYLLNRISYEKSLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILRRKLKIRDLFRNLDSLCAEGKLPESLFDSKGEIDSEDIFCAKCQSKELSTNNDIILCDGVCDRGFHQFCLDPPLLTEDIPPGDEGWLCPGCECKDDCIELVNDSLGSSLSLSDTWERVFPEAATAAGNNMDSNLGLPSDDSDDDDYNPNGPEDVEVEGDESSSDESEYASASEKLQSSHEDQYLGLPSEDSEDDDYDPNRADVDCKIAEESSSSDFTSDSEDLAAIQDKRSPGQDEDIVSVSLDDVKNLKGSGKQKGKVDKKPSMADELSSLLEPDPGQEGSTPVSGKRHVERLDYKRLYDETYRSDTSEDEDWTATATPSSKKKLTANVTLVSPNGNASNNPRHTPMRNTHQNRAENTDNSPAKSVDSCVKYDSRDNKSGSSAYKRVKRLGEVALQRLHKSFKENQYPDRTTKESLAQELGITFQQVAKWFDNTRWSFRHSSQMESDPGKNILWLGNEGKAKNEGERKCELMSPEVSGENSKSSSYRKRKHLSESQASETQLDIDGSATSTPNAHEIQIGNKMKTRKRK* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2438 1106 MobiDBLite consensus disorder prediction 744 760 - -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 474 522 - -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 798 843 - -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 1059 1073 - -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 1074 1095 - -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 713 742 - -
Apr8g2438 1106 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 400 1029 - -
Apr8g2438 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 672 IPR013083 -
Apr8g2438 1106 SUPERFAMILY FYVE/PHD zinc finger 605 673 IPR011011 -
Apr8g2438 1106 ProSitePatterns Zinc finger PHD-type signature. 616 667 IPR019786 -
Apr8g2438 1106 Gene3D - 954 1025 - -
Apr8g2438 1106 Pfam PHD-finger 615 670 IPR019787 -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 439 460 - -
Apr8g2438 1106 SMART PHD_3 615 668 IPR001965 -
Apr8g2438 1106 CDD homeodomain 962 1019 IPR001356 GO:0003677
Apr8g2438 1106 ProSiteProfiles 'Homeobox' domain profile. 958 1018 IPR001356 GO:0003677
Apr8g2438 1106 PANTHER HOMEOBOX PROTEIN HAT3.1 400 1029 - -
Apr8g2438 1106 CDD PHD_PRHA_like 615 667 IPR045876 -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 478 492 - -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 1017 1106 - -
Apr8g2438 1106 Pfam Homeodomain 971 1014 IPR001356 GO:0003677
Apr8g2438 1106 SMART HOX_1 959 1022 IPR001356 GO:0003677
Apr8g2438 1106 MobiDBLite consensus disorder prediction 862 888 - -
Apr8g2438 1106 ProSiteProfiles Zinc finger PHD-type profile. 613 670 IPR019787 -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 889 944 - -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 946 961 - -
Apr8g2438 1106 SUPERFAMILY Homeodomain-like 964 1023 IPR009057 -
Apr8g2438 1106 MobiDBLite consensus disorder prediction 700 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2438 Apr-Chr8 34495038 34503948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2438 438 1067 Homeobox Transcription Factor Family AT3G19510 43.284 1.77e-124 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Apr8g2438 PHD 1.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2438 - - aprc:113871869 2148.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2438 8 34495038 34503948 Apr8g2438 8 34495038 34503948 ECH