Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2429 ATGACGAGCGCTTCGGAGTTATTCCACATCAGGAGGCATCGATTAGGACGAAATGCTCTCGATCTAGGGTTGCACTCCTCCCCCGCTCCCGAACTCCACGCCGGCGACTCTCTTCCCCGCCACTACCTCTTGCGTCGCCTCCGTCACCACCAGGAGCGTGCGTCTGATAGAATTGATGTTAGGTATCGACGGTCGTTCTTAAATAATGACAGTGTGGATTCAGTAGAAAGCGTAAGAGGCACACTTGGAGTGAATGCCGATGACAGATTACCCGTAGGTGTGGTTCTTGCACGGGCAAGACTCCTTCAGAGGTTGAGAGGGGAACCTATCTCTAGAAACAGGCATTATGGTAGAGATTCAATGGGCGAGGATCGAGAAAGCGAATCGTCAAATGAAGCTCCAACCGAGGACTCTCTAGTTACCGACTTGGCTTCTCAAATGGGAAGGTCCCAGCTGTTGCAAGAACTAAACAAAAAGCCACCTGGACTTACTCAGGAGGCATTGAAATGTTTGCATCAGGAAGTTTTTAGCAGCATGGAGATAGAATTGGAGTCCGGGGTATTGCATGATTGTAGTATATGCTTGGAATCTTTCATAGATGGAGATGAGCTGATACGTTTGGCTTGTGGGCATAAATTTCACTCTGCATGTTTGGATCCCTGGGTTCGCTGTTGTGGAGACTGTCCATACTGTCGAAGATGTATAGTTGTAAATAGTAACTTACCCCAAAACGACGATGAATAG 744 0.4812 MTSASELFHIRRHRLGRNALDLGLHSSPAPELHAGDSLPRHYLLRRLRHHQERASDRIDVRYRRSFLNNDSVDSVESVRGTLGVNADDRLPVGVVLARARLLQRLRGEPISRNRHYGRDSMGEDRESESSNEAPTEDSLVTDLASQMGRSQLLQELNKKPPGLTQEALKCLHQEVFSSMEIELESGVLHDCSICLESFIDGDELIRLACGHKFHSACLDPWVRCCGDCPYCRRCIVVNSNLPQNDDE* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2429 247 SUPERFAMILY RING/U-box 190 240 - -
Apr8g2429 247 CDD RING-H2_PA-TM-RING 190 232 - -
Apr8g2429 247 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Apr8g2429 247 PANTHER SI:CH211-59O9.10 1 237 - -
Apr8g2429 247 MobiDBLite consensus disorder prediction 112 138 - -
Apr8g2429 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 237 - -
Apr8g2429 247 Pfam Ring finger domain 190 232 IPR001841 -
Apr8g2429 247 SMART ring_2 191 231 IPR001841 -
Apr8g2429 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 236 IPR013083 -
Apr8g2429 247 MobiDBLite consensus disorder prediction 112 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2429 Apr-Chr8 34432855 34435344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2429 1 236 C3H Transcription Factor Family AT1G49850 41.923 5.78e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2429 - - gmx:548042 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2429 8 34432855 34435344 Apr8g2429 8 34432855 34435344 ECH