Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2427 ATGGGTGACACATTAAATGAGGTGCAATGCAGGGTTGATGTGCCTGTTGTTTCTCCTAAGAGGGACATTGCATTGTTTGAAGGGGACAAAGATATTGAGCCACACAACGGCATTGAATTTGAATCTCATGAAGCAGCATATTCATTTTATCAGGAATATGCCAAATCTATGGGATTCACTACTTCAATAAAAAACAGCAGACGCTCAAAGAAAACAAAAGAGTTTATTGATGCTAAATTTGCGTGCTCTAGGTATGGAGTTACACCTGAGTCTGACAGTGGGAGCAGTCGAAGACCAAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCATGTGAAGAGAAGGCCAGATGGAAAGTGGATCATTCATGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTTTGGCGTATCATTTTCGAATTCATAGAAATGTGAAATTAGCTGAAAAGAATAATGTTGATATCTTGCATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCTAGGCAATCGGGTGGCTGTCAAAACATTGGGTCTGTCTTGGGTGATATAAACTACCAGTTTGACAGAGGCCAGTATTTGGCTTTGGATGAGGGAGATGCCCAAGTTATGCTTGAGTATTTTAAGCATGTTCAAAAGGAGAGTCCTAACTTTTTCTATTCTATAGATTTAAATGAAGAGCAGCGCTTAAGAAATCTATTTTGGATTGATGCAAAAAGCATCGATGATTATCTCAGCTTTAGTGATGTAGTCTCATTTGATACCACTTACATAAAAAGCAATGACAAATTGCCATTTGCACCTTTTGTTGGAGTGAACCATCACTCTCAACCTATATTGCTTGGATGTGCATTGATTTCGGATGAGACTAAACCAACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCAATGGGCGGGCAAGCTCCAAAAGTTATTATCACTGACCAAGACAAAGCCTTGAAGTCAGCAATTGAGGAAGTCTTCCCAAATGTACGGCATTGCTTTTCTCTTTGGCACATATTGGAAAGGATACCTGAAAATTTGTCTTTTGTGATCAAACAGTATAAGAACTTCTTGCCAAAATTTAACAAGTGCATTTTTAAGTCATGGACAGATGAACAGTTTGACATGAGATGGTGGAAAATGGTCACTACATTTGAACTCCATGATGATATATGGTTTCAGTCATTGTATGAAGACCGGAAAAAGTGGGTGCCAACTTACATGGAGGATACCTTTTTAGCTGGAATGTCTACACCTCAGCGCTCTGAAAGTATGAACTATTTCTTTGACAAGTATATTCATAAAAAAATTACCCTAAAAGAGTTTGTGAAACAATATGGAATAATTCTTCAGACAAGGTATGATGAGGAAGCCATTGCAGATTTTGATACATTGCACAAACAGCCAGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAGTTTATACACATGCAATCTTTAAGAAATTCCAAGTTGAAGTTTTGGGTGTAGCTGGTTGTCAATCTAGGATAGAGGCTGGAGATGGAACTATTAAATTCATTGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTTACTTGGAATGAGTTGAACTCAGAGGTCTCTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGGCATGCATTGAGTGTTCTCCAACGTTGTGGTTGTTCTAGTGTTCCATCTCGTTATATCTTGAAGAGGTGGACCAAAGATGCCAAGATTAAGGAATCCATGGCAGATAGGACAAGAAGGGTGCAGACTAGGGTGCAACGCTATAATGACTTATGTAAACGAGCTATTGATTTGAGTGAAGAAGGATCGTTATCTGAAGAGAATTACAATGTTGTTTTTCGTGCACTTGTGGATGCCCTGAAGAACTGTGTCCTTGTGAATAATTCTAATAACAATGGAGCAGAAACTAGCAACAATGCCTATAGCCTTCGTGAAGCACAAGAAAATCAGGGTACCCTTGCTTTGAAGCCAAGTAAGAAGAGGATATCAAGGAAAAGAAAGGTACAATTAGAGCAGGATGTTATGCTTGTTGATGCTCAAGATAGCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATAACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGCAGGTACAGTTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTTAATCAACAGAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAAGCATTCATGGGCTGGTAGAGGAGGGCAATTGGAATTTCGACCAGCAACTACTTTTGGATATAGCCTTCAGGATGAACCTGAACCTCAGTTTCATGGTAACAGTTCAAGAAATACTTAGAAATCACCTCTTCTCTAATATGGTAGTTTCCTCAGAGGCTGTCATGTTTCTATGTGGTGATCGAAAAGATAATTGA 2505 0.3904 MGDTLNEVQCRVDVPVVSPKRDIALFEGDKDIEPHNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRRPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNVDILHAVSERTRKMYVEMSRQSGGCQNIGSVLGDINYQFDRGQYLALDEGDAQVMLEYFKHVQKESPNFFYSIDLNEEQRLRNLFWIDAKSIDDYLSFSDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALISDETKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKSAIEEVFPNVRHCFSLWHILERIPENLSFVIKQYKNFLPKFNKCIFKSWTDEQFDMRWWKMVTTFELHDDIWFQSLYEDRKKWVPTYMEDTFLAGMSTPQRSESMNYFFDKYIHKKITLKEFVKQYGIILQTRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEAGDGTIKFIVQDYEKDEEFLVTWNELNSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSRYILKRWTKDAKIKESMADRTRRVQTRVQRYNDLCKRAIDLSEEGSLSEENYNVVFRALVDALKNCVLVNNSNNNGAETSNNAYSLREAQENQGTLALKPSKKRISRKRKVQLEQDVMLVDAQDSLQQMDNLSSDAITLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQQSMQGLGPLNSMAPSHDGFFGTQQSIHGLVEEGNWNFDQQLLLDIAFRMNLNLSFMVTVQEILRNHLFSNMVVSSEAVMFLCGDRKDN* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2427 834 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Apr8g2427 834 ProSiteProfiles Zinc finger SWIM-type profile. 534 570 IPR007527 GO:0008270
Apr8g2427 834 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 16 722 - -
Apr8g2427 834 Pfam SWIM zinc finger 535 569 IPR007527 GO:0008270
Apr8g2427 834 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 722 IPR031052 GO:0006355
Apr8g2427 834 Pfam MULE transposase domain 255 348 IPR018289 -
Apr8g2427 834 SMART 26again6 545 572 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2427 Apr-Chr8 34416658 34421659 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr8g2427 MULE 3.1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2427 - - gmx:100805377 1433.7