Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2418 ATGAGTTGCAATGGTTGTCGTGTCCTTAGAAAGGGTTGCAGTGATGACTGCATGCTACGACATTGCCTACTATGGATAGAGAATCCTCAAGCTCAGGCTCACGCCACCGTCTTTGTTGCCAAGTTCTTCGGCCGTGCCGCCCTCATGTCTTTCCTTTCCTCCGTACCCGCCAACCAAAGATCTGCTTTGTTTCAGTCACTGCTGTATGAAGCAGTGGGACGTACTATAAATCCAGTGAATGGAGCAGTGGGGCTGTTGTGGACTGGTAATTGGCATCTTTGCCAAATGGGTGTGGAGAAAGTGCTTCGAGGTGGTGCTGCGTTGACCCCACTGCCTCAGTTCTCGGGTGTAGATGTAGATGCTCAGCAAGTAACTGCTTCGGAGAGAGTGGTGGTTGGAGGTGGAAGGTGTCCCCAACCAAAGAAGCAACGTGCGAGGACCCCGTCCGAGGAATCTGAGATGTCCACGTTGGAAAGTAGAACAGAGGATTGTGCTCCTCAAAGTGAAAGAAAGCTCCTAACACTATTCTTCTGA 534 0.5075 MSCNGCRVLRKGCSDDCMLRHCLLWIENPQAQAHATVFVAKFFGRAALMSFLSSVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLRGGAALTPLPQFSGVDVDAQQVTASERVVVGGGRCPQPKKQRARTPSEESEMSTLESRTEDCAPQSERKLLTLFF* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2418 177 MobiDBLite consensus disorder prediction 143 165 - -
Apr8g2418 177 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Apr8g2418 177 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Apr8g2418 177 MobiDBLite consensus disorder prediction 133 165 - -
Apr8g2418 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 177 - -
Apr8g2418 177 PANTHER LOB DOMAIN PROTEIN 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2418 Apr-Chr8 34374240 34375604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2418 1 114 AS2 family AT3G49940 74.561 2.39e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr8g2418 LOB 8.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2418 - - gmx:100816269 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2418 8 34374240 34375604 Apr8g2418 8 34374240 34375604 ECH
Apr8g2418 8 34374240 34375604 Apr7g0007 7 775114 775837 ECH
Apr5g1468 5 18716020 18716584 Apr8g2418 8 34374240 34375604 ECH
Apr7g0845 7 15489923 15491233 Apr8g2418 8 34374240 34375604 PCT