Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2411 ATGGATCCTGCTGAGCAAATTTCTGAAGAATGGAGTTCTCTTAGTGGGTTGTACACAGCTGAGGAAGCTGACTTTATGAGCCAGCTGCTTGGTGACTGCTCAGTCCCTCAGCATTTGTATGGAAATTTTAATTTGGGAATTCCATCTGCAATATGGCCTGGTCATGAATCAACAATAGTGAGCGTGACAAGCATCAATAAAAGTTCAGATTTTCCTGCAAATGTTGATAATAGTAATGCTAATTATTTTTGTTTCTTACAAGGAAGTAGCTACACTTCTGAGAGTAGCAATACATTTCCTACTACAAGTGGTGGTAACTGCTGCTTGAATAATTCAGTAGCCAACATTGGCTACATGAACTCAGGTTTTTCCTTAGGAGATAGCACTCAAGGGAATGACAGCCAACAGATAAATGAAAACACTGATGAAGAGTTAGGTCTGGAGGTTGTTGCTGACAAGAATATGCAGGATCACAAGGAATGTGAAGTACTGGTTTCTGAACCAGCAGAAGAGGGTATAAACAACAATCTTGAGAAGTCAGAGAAAAGATCTAGGAGCTCAATGCAGGTCCGAAAGGGTAAGAGAAATGTTAAATCGATGAAGAAATCAAAACTGGCTTCTATAAGCAACACTGAAGAGGGTAGAAATGGTGATCTTCAGGGTCAAAGCTTGAGCAGTTGCTGCTCAGAGGATGATGATTCCAATGCTTCTCAGGAGCTAAATGGAGGAGGATCTTCAAGTTTTAGCCCAGAGGATTCTACAGCTCTGAATTTAAAAGGAAAAAAATCAACATCTAATAGAGGTTCTGCCACTGATCCACAAAGTGTTTATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAATCTAGTCCCTAATGGAACAAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTACACCAACCAAACATCCATAA 1068 0.3989 MDPAEQISEEWSSLSGLYTAEEADFMSQLLGDCSVPQHLYGNFNLGIPSAIWPGHESTIVSVTSINKSSDFPANVDNSNANYFCFLQGSSYTSESSNTFPTTSGGNCCLNNSVANIGYMNSGFSLGDSTQGNDSQQINENTDEELGLEVVADKNMQDHKECEVLVSEPAEEGINNNLEKSEKRSRSSMQVRKGKRNVKSMKKSKLASISNTEEGRNGDLQGQSLSSCCSEDDDSNASQELNGGGSSSFSPEDSTALNLKGKKSTSNRGSATDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKHP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2411 355 MobiDBLite consensus disorder prediction 202 273 - -
Apr8g2411 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 334 IPR036638 GO:0046983
Apr8g2411 355 MobiDBLite consensus disorder prediction 165 280 - -
Apr8g2411 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 351 - -
Apr8g2411 355 Gene3D - 272 332 IPR036638 GO:0046983
Apr8g2411 355 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
Apr8g2411 355 SMART finulus 275 324 IPR011598 GO:0046983
Apr8g2411 355 PANTHER TRANSCRIPTION FACTOR BHLH54 8 351 - -
Apr8g2411 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2411 Apr-Chr8 34329103 34330650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2411 10 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.800 2.54e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g2411 HLH 8.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2411 - - gmx:100817334 552.747