Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2388 ATGTCGAGCTTAAGGAAAAGCCGTGGTCGCCAAAAGATTGAGATGAAGAAAATGAGCAATGAGAGCAACCTTCAAGTCACGTTCTCAAAGCGTCGCAGTGGGCTTTTCAAGAAAGCGAGTGAGCTTTGCACCCTCTGCGGTGCTGACGTGGCTCTCGTTGTGTTCTCACCCGGCGAGAAGGTGTTCTCCTTCGGACACCCCAACGTGGACGCCGTCATAGATCGCTATCTCTCGCGCGCCCCACCGCCAAACTCGGGCACCATGCAGTTCATCGAGGCTCACCGCAGCGCCAACGTGCGTGAACTCAACGCGCAGCTCACTCAGATCAACAACCAGCTCGACACCGAGAGGAAGCGCGGCGAGGAGCTGAGCCGTATGAGAAAGGCGGCGCAGGCCCAGTTCTGGTGGGCCGAGCCCTTTGAGGAGATGAACAGAGCCCAACTGGAAGAGCTCAAAGGGGCGTTGGAGGAGCTGAAGAAACATGTAGCGCGCCTCGCTGACAGGCTCCTGGTTCAGACTGCGGCTAACCCGGCTCAGTATTTTACCGGCGCGTCTTCTTCCAACCTTGTTCATCAGCCACCTCCACCTCAGGTGTTTCCCCCTCAGATGCTTCAGCCATCGATGTTTCCGAATCATATGTTTGATGGAAGCATGATGCGTTACCATGCGTATAATAGCATGGGCATGGGAGGGTTTGGACCTGCTGGTTTCTATTGA 717 0.5565 MSSLRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDAVIDRYLSRAPPPNSGTMQFIEAHRSANVRELNAQLTQINNQLDTERKRGEELSRMRKAAQAQFWWAEPFEEMNRAQLEELKGALEELKKHVARLADRLLVQTAANPAQYFTGASSSNLVHQPPPPQVFPPQMLQPSMFPNHMFDGSMMRYHAYNSMGMGGFGPAGFY* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2388 238 Coils Coil 141 168 - -
Apr8g2388 238 Gene3D - 20 85 IPR036879 GO:0003677|GO:0046983
Apr8g2388 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 186 - -
Apr8g2388 238 MobiDBLite consensus disorder prediction 1 20 - -
Apr8g2388 238 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Apr8g2388 238 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Apr8g2388 238 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Apr8g2388 238 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Apr8g2388 238 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Apr8g2388 238 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Apr8g2388 238 PANTHER MADS BOX PROTEIN 7 186 - -
Apr8g2388 238 Coils Coil 99 119 - -
Apr8g2388 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Apr8g2388 238 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Apr8g2388 238 Gene3D - 86 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2388 Apr-Chr8 34167030 34167746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2388 4 188 Type I MADS-box Gene Family AT5G60440 57.447 1.25e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr8g2388 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2388 - - gmx:100780445 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2388 8 34167030 34167746 Apr8g2388 8 34167030 34167746 ECH