Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2387 ATGTCGAAGAATAAGAAGTCTAGCTTAGGTCGCCAAAAGATCCCAATTGAGAAAATACCCAAAAAAAGTCATTTGCAAGTTACATTTTCTAAACGTCGTTCAGGACTCTTTAAGAAAGCTAGCGAACTTTGCACCCTTTGTGGGGTAGAGATTGCAATTGTAGTTTTCTCTCCAGCTGATAAGGCATTCTCTTTTGGCCATCCAGAAGTTGAGTCCCTCATCGACCGTTACATGACACGAAACCCTCCACAAGAGTCTAGTGCTCACCAACTTGTTGAGGCGCATCGAAATGCTAATGTTCGTGATCTCAACATGCAATTGACTCAGCTTTTTAACCATTTGGAGATTGAAAAGAAGCGAGGGGAAGAGCTTGATCATGTGAGGAAAGCTAGACAGAGACAGTTTTGGTGGGAGAGTCCTATTGATGAGCTTGGATTGCATGAATTGCTACAGGTGAAGGCTTCAATTGAGGAGCTCAAGAAAAATATAGAAAAACATGCTACCAAATTCATGATGGACCAATCTAATATATCACCTTCACCAATTGTTGGGGCTAATGGACTTGCACATTATGATGCCTTTGAGAACAAATCTGGTGGTGGGATTAATATTGCTTCAACACTTCCTAATGCTCATTATCTCGGTTTTCGGAATGGGTATCTCTGA 666 0.4129 MSKNKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYMTRNPPQESSAHQLVEAHRNANVRDLNMQLTQLFNHLEIEKKRGEELDHVRKARQRQFWWESPIDELGLHELLQVKASIEELKKNIEKHATKFMMDQSNISPSPIVGANGLAHYDAFENKSGGGINIASTLPNAHYLGFRNGYL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2387 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Apr8g2387 221 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Apr8g2387 221 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Apr8g2387 221 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Apr8g2387 221 PANTHER MADS BOX PROTEIN 8 178 - -
Apr8g2387 221 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 178 - -
Apr8g2387 221 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Apr8g2387 221 Gene3D - 90 180 - -
Apr8g2387 221 SUPERFAMILY SRF-like 10 86 IPR036879 GO:0003677|GO:0046983
Apr8g2387 221 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Apr8g2387 221 Coils Coil 149 169 - -
Apr8g2387 221 CDD MADS_MEF2_like 10 79 IPR033896 GO:0000977|GO:0045944
Apr8g2387 221 Gene3D - 21 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2387 Apr-Chr8 34160293 34160958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2387 6 203 Type I MADS-box Gene Family AT5G60440 50.746 8.52e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr8g2387 SRF-TF 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2387 - - gmx:100793705 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2387 8 34160293 34160958 Apr8g2387 8 34160293 34160958 ECH