Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2386 ATGGATATGTTTGAGCAGAGGAAGAAAACCACAGGCCGCAAAAAGATTGAGATTAAGAAGCTTGACAAGGATAGTAACAAGCAAGTCACATTCTCAAAACGACGAACTGGGTTGTTCAAAAAAGCTAGCGAGCTCTGCATTTTATGCGATGTTCATATAGCCATAATTGTGTTCTCTCCTGCTGACAAACTCTTCTGTTTTGGTGAACCCAACATTGATGCCATCATTACCCGTTATCTCAAAGGAACCACAGAGTTTGAGGCTGCAAAGTCAAGAGGCAAATCGGTGTCCTATGAAGAGCATAATAAGCAATATGAGGAAGCCATGAAGAAATTGGAGTTAGAAAAAAGGAAGCTTGCTGAAACTGAAACTTTGGCTAAGGTTTGGAATAGAGTAGATTGGTGGAACGAGTCCATTGATGAGATGAGTGGTGATCAATTGGAGCAGTTTATGGTGTCCATTTATGAGTTAAGAAGGAAATTGGCTGAAAGAGCAGGTGAATTGATGCTGATGCTAGCGATGTTATAG 528 0.4072 MDMFEQRKKTTGRKKIEIKKLDKDSNKQVTFSKRRTGLFKKASELCILCDVHIAIIVFSPADKLFCFGEPNIDAIITRYLKGTTEFEAAKSRGKSVSYEEHNKQYEEAMKKLELEKRKLAETETLAKVWNRVDWWNESIDEMSGDQLEQFMVSIYELRRKLAERAGELMLMLAML* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2386 175 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
Apr8g2386 175 Coils Coil 95 125 - -
Apr8g2386 175 CDD MADS_MEF2_like 12 83 IPR033896 GO:0000977|GO:0045944
Apr8g2386 175 PANTHER MADS BOX PROTEIN 8 171 - -
Apr8g2386 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 171 - -
Apr8g2386 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Apr8g2386 175 Gene3D - 23 119 IPR036879 GO:0003677|GO:0046983
Apr8g2386 175 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Apr8g2386 175 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Apr8g2386 175 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Apr8g2386 175 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Apr8g2386 175 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2386 Apr-Chr8 34156317 34156844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2386 8 159 Type I MADS-box Gene Family AT5G60440 39.375 8.73e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr8g2386 SRF-TF 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2386 - - cam:101502875 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2386 8 34156317 34156844 Apr8g2386 8 34156317 34156844 ECH
Apr7g0342 7 9165454 9166088 Apr8g2386 8 34156317 34156844 PCT