LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g2382	ATGTCTGTTTTTGCTTTAAGATTACTTTCATTTCTTTGTTGTCTCCTTTCCATAATCATTTTTATATCTCAAGTAAGCGCCGATAATACCACACAAAACTACCACTACTTCTGTAATTTTAACAACAGAGGTAATTACACACCCAACAGCTCCTATCACACGAATCTCAACACCCTTCTGTCCACTCTCATTTCCGACACACAAATTAACTATGGTTTCTACAATTTCTCATTCGGCCAAAGCACCGACAAAGTGAACGCCATTGGGCTATGTAGAGGAGATGTTAAGCCCGATGAATGCCGCAGTTGCCTCAACGGTTCAAGAGCCAATCTCACACAGCTTTGTCCAGACCAGAAGGAGGCAATTGGGTGGTACGAGGACGAGAAATGCATGTTGCGTTACTCAGACCGTTCAATATTTAACCTCGAGGAAACTGGTCCTGCGTACTATGCTAACAACATGAAAAATGCAACGGACTTGAATCAGTTCAATGAAGATGTAAGGACCTTGCTGGATAGCTTAAAAAGCACAGCTGCATTAGGTGATTCTAGATTTAAATATGCTGCAGGAAATAAATCTGGTCCCGATGATCAAGTCATATATGGTCTTGTTCAGTGCACTCCAGATTTGTCTGGCTCACAGTGCGATGATTGTTTGGTTCAGTCCATTGCACGCATCCCAATAGACTGTTGCAAAGACAAGATTGGCGGTAGAGTTGTTAGACCCAGTTGTTTTATGAGATTCGAAACCTCCTTTCTCTTCTATGGACCTGCAGCATATGTGCCACCCTCCTCCAACACCACTAACCCTCCCTCAAAAGGAAAGAGCAACACGGCTACCATTGCCATAGCAATAGCAGTTCCAGTTGTTGTTGTCACGGTGGTGGTGTTCATTTTTATCTGCATCTGTTTAAGAGCAAGCAAGTCAAGGACAAAGTTTGAAATTCAACAAGAAGGATATGATGATGATGAAATTGACATTTCTGAGTCATTGCAATTCGACTTCAACACCATACGGGATGCTACAAATGACTTTTCTGATTCCAACAAACTTGGACAAGGTGGATTTGGGACTGTTTACAAGGGTAGGCTCTCCAATGGAAAAGAGATTGCCGTCAAAAGGTTGTCAATGCAATCTAGTCAGGGAGATGTAGAATTCAAGAATGAAGTGCTTTTAGTGGCAAAGCTTCAGCACCGAAATTTAGTTAGGTTACTTGGTTTCTGTCTGGAAGGAAGAGAAAGACTACTTGTTTATGAATATGTTCCTAATAAAAGCCTTGATTACTTCTTATTTGATCGAACCAAGAGAGCACAATTAGATTGGGAAAAGCGCTACAAAATCATTGTTGGTGCTGCTCGAGGCATTCTCTACCTCCATGAGGACTCTCAGTTGCGTGTTATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTGGATGAAGAGATGAATCCTAAGATATCAGATTTTGGTTTGGCAAGAATGTTTATTGTGGACCAAACTCATGCAGATACAAGTAGAATTGTTGGAACCTATGGATATATGGCCCCTGAGTATGCAATGCATGGACAATTTTCAATGAAATCAGATGTCTTTAGCTTTGGTGTATTAGTTCTTGAGCTTGTAAGTGGCCAGAGAAACACTGGCATTCAACATGGGGAGAGTATAGAGGATCTACTCAGTTTTGCATGGAGAAACTGGAAGGATGGAAGAGCTGCAAACATTGTAGATCCCACATTAAACAGCAGTTCACAAAATGAAATAATGAGATGCATCCACATTGGGTTGCTATGTGTTCAAGAAAATTTAGCTGCCAGACCAACCATGGCTTCTGTTGTACTTGGACTTAATAGCCATTCTGTCACTCTCGCGGTACCTTCGGAACCTGCATTTTATGTGGATAATACTGCAAACCTTGAAGACATACAGTTATTGGACTCAGGTGCAACAAGATCAAGCGAACAAACTACTACTCAAGACTCGGTCAATGAGGCTTCCATTACTGAGCTATATCCTCGCTAG	2019	0.4151	MSVFALRLLSFLCCLLSIIIFISQVSADNTTQNYHYFCNFNNRGNYTPNSSYHTNLNTLLSTLISDTQINYGFYNFSFGQSTDKVNAIGLCRGDVKPDECRSCLNGSRANLTQLCPDQKEAIGWYEDEKCMLRYSDRSIFNLEETGPAYYANNMKNATDLNQFNEDVRTLLDSLKSTAALGDSRFKYAAGNKSGPDDQVIYGLVQCTPDLSGSQCDDCLVQSIARIPIDCCKDKIGGRVVRPSCFMRFETSFLFYGPAAYVPPSSNTTNPPSKGKSNTATIAIAIAVPVVVVTVVVFIFICICLRASKSRTKFEIQQEGYDDDEIDISESLQFDFNTIRDATNDFSDSNKLGQGGFGTVYKGRLSNGKEIAVKRLSMQSSQGDVEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEYVPNKSLDYFLFDRTKRAQLDWEKRYKIIVGAARGILYLHEDSQLRVIHRDLKASNILLDEEMNPKISDFGLARMFIVDQTHADTSRIVGTYGYMAPEYAMHGQFSMKSDVFSFGVLVLELVSGQRNTGIQHGESIEDLLSFAWRNWKDGRAANIVDPTLNSSSQNEIMRCIHIGLLCVQENLAARPTMASVVLGLNSHSVTLAVPSEPAFYVDNTANLEDIQLLDSGATRSSEQTTTQDSVNEASITELYPR*	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g2382	672	Pfam	Salt stress response/antifungal	155	250	IPR002902	-
	Apr8g2382	672	Pfam	Salt stress response/antifungal	38	136	IPR002902	-
	Apr8g2382	672	Pfam	Protein tyrosine and serine/threonine kinase	348	612	IPR001245	GO:0004672\|GO:0006468
	Apr8g2382	672	ProSitePatterns	Protein kinases ATP-binding region signature.	351	373	IPR017441	GO:0005524
	Apr8g2382	672	SMART	serkin_6	345	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr8g2382	672	Gene3D	Transferase(Phosphotransferase) domain 1	421	624	-	-
	Apr8g2382	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468
	Apr8g2382	672	ProSiteProfiles	Protein kinase domain profile.	345	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr8g2382	672	SUPERFAMILY	Protein kinase-like (PK-like)	328	612	IPR011009	-
	Apr8g2382	672	Gene3D	-	147	252	IPR038408	-
	Apr8g2382	672	Gene3D	-	32	138	IPR038408	-
	Apr8g2382	672	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	5	658	-	-
	Apr8g2382	672	MobiDBLite	consensus disorder prediction	648	672	-	-
	Apr8g2382	672	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	5	658	-	-
	Apr8g2382	672	CDD	STKc_IRAK	351	612	-	-
	Apr8g2382	672	Gene3D	Phosphorylase Kinase; domain 1	306	420	-	-
	Apr8g2382	672	ProSiteProfiles	Gnk2-homologous domain profile.	145	253	IPR002902	-
	Apr8g2382	672	MobiDBLite	consensus disorder prediction	648	665	-	-
	Apr8g2382	672	ProSiteProfiles	Gnk2-homologous domain profile.	34	139	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g2382	Apr-Chr8	34139965	34143779	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g2382	6	672	Receptor kinase-like Gene Family	AT4G21410	49.138	0.0	609

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Apr8g2382		PK_Tyr_Ser-Thr	1.1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g2382	-		-	var:108324787	898.656