Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2380 ATGGGTGCTATTTCATTTCTTTGCTGTTTCTTTGCGATAATCATATCGCAAGGCAGCGCCCAGACTTGTGATAACGAGAAAGGAAACTACACAAGCGATAGCGCCTATCACGACAACCTCAAGGTCCTCCACACTCTTTTGTCCACCTTCACTTTCCTCCGAGATATTAACTATGGTTTCTACAATTTCTCGTACGGCGAACACACAGACAAAGTATACGTCATTGGCCTCTGTAGAGCTGATATTAACCCAGACACGTGCCTCAGTTGTCTCAGTAATTCGAGTGTGTCTCTCACACAGAACTGTCCAAACCAGAAAGAGGCAATCATGTGGACTGGAGAGTGCATGTTGCGCTACTCTCACCGCTCAATATTTGGGGTCCTGGAAAATGATCCAAAGACAATACTCTATTTTACAAAGAAAGTAACAGGATCGGTGGATGCATTCAATGAAGCGCTGGCGCAGTTGATGAGGAACCTAACAAAAGAAGCTGCATCAGGTGACTCTCGTCGTAAGTTTGCTTTAGGTACCTCGCCTGCTGGTTTTCAAACCATATACGGTAATGTGCAGTGTACGCCTGATTTGTCATCGGAAGAATGCAGTAACTGCTTGAGTGATGCTATCTCAGAAATCCCAGGTTGTTGTAGTGGTTATGCTGGAGTTAACGTTTTAAAACCCAGTTGTAGAATTAGATTTGACCCTTATAGCTACTTCGGTCCTTTGCCAAAATTAGACCCAGATGTACCACCATCGCCCCAACCTCAACTCTCCACCCGCAACCCTTCTACACAAGGAAAGAGTAACTCGCCACTGACAGCCATCGCCATAGCAGTGGCCGTTGTTGTTGTTGTATTGGTGCTCTGTTTTATCTTTATTTATTTGAAAGTGAGGAGGCCAAGGGATATTTTTGAAACTGAAGATGATGATGATGAAATTAAAACCCACGAGTCATTACAATTACAGTTTTATACAATACGAATTGCCACAAATGACTTCTCAGATTCTAATAAACTTGGACAAGGAGGATTTGGGGCTGTTTACAGGGGTAGATTCTCCAATGGACGAGAGATTGCTGTCAAAAGATTGTCAAGGGATTCTCGCCAAGGAGATATTGAATTTAAGAATGAGGTGCTTCTAGTGGCCAAGCTTCAACACCGAAATTTAGTCAGACTACTTGGTTTTTGTCTCGAAGGAAGAGAAAAGCTACTTGTTTACGAGTTTGTTCCTAATAAAAGCCTTGATTATTTCATATTTGATGAAACCATGAAAACAGAATTGGCATGGCAAAACCGCTACAAAATAATTGGAGGTATTGCTCGTGGCATTCTTTACCTTCATGAGGATTCTCGATTGCGCGTTATTCATCGTGATATTAAAGCTAGCAACATTCTCTTAGACCAAGAGATGAATCCTAAGATAGCTGATTTTGGCATGGCAAGATTGTTTGGTCTGAATCAAATACATGGAGATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGATGTCTTCAGTTTTGGGGTATTGGTTCTTGAGATTTTAAGTGGCCTAAAAAATCACGGTATTCGTCATGGGGAGAATGCTGAGGACCTACTGAGCTTCGCATGGCGAAAATGGAGGGAGGGAACAGCTTTGAATATTGTAGATCCCGTATTAAATAACGCTTTGCAAAGTGAAATAATGAGATGCATCCACATTGGGTTACTGTGTGTACAAGAAAATGTAGCTGCCAGACCAAACATGGTTGCCGTTGTACGGATGCTTAGTAATGATACTGACACTCTCCCAGTACCTTCAGAACCAGCATTTTATGTGGATAATACTACTGGAAACCTTTCTGGCATGCATCAATGGGAGTATAATTCAACGGCAACAAGATCAACCCAACAGTTAAATAGATCATCTCAAGAATCAGTCAATAAAATTTCAATTACTGAGTTATATCCTCGCTAG 1995 0.4155 MGAISFLCCFFAIIISQGSAQTCDNEKGNYTSDSAYHDNLKVLHTLLSTFTFLRDINYGFYNFSYGEHTDKVYVIGLCRADINPDTCLSCLSNSSVSLTQNCPNQKEAIMWTGECMLRYSHRSIFGVLENDPKTILYFTKKVTGSVDAFNEALAQLMRNLTKEAASGDSRRKFALGTSPAGFQTIYGNVQCTPDLSSEECSNCLSDAISEIPGCCSGYAGVNVLKPSCRIRFDPYSYFGPLPKLDPDVPPSPQPQLSTRNPSTQGKSNSPLTAIAIAVAVVVVVLVLCFIFIYLKVRRPRDIFETEDDDDEIKTHESLQLQFYTIRIATNDFSDSNKLGQGGFGAVYRGRFSNGREIAVKRLSRDSRQGDIEFKNEVLLVAKLQHRNLVRLLGFCLEGREKLLVYEFVPNKSLDYFIFDETMKTELAWQNRYKIIGGIARGILYLHEDSRLRVIHRDIKASNILLDQEMNPKIADFGMARLFGLNQIHGDTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEILSGLKNHGIRHGENAEDLLSFAWRKWREGTALNIVDPVLNNALQSEIMRCIHIGLLCVQENVAARPNMVAVVRMLSNDTDTLPVPSEPAFYVDNTTGNLSGMHQWEYNSTATRSTQQLNRSSQESVNKISITELYPR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2380 664 Pfam Salt stress response/antifungal 146 233 IPR002902 -
Apr8g2380 664 Pfam Salt stress response/antifungal 23 121 IPR002902 -
Apr8g2380 664 MobiDBLite consensus disorder prediction 243 265 - -
Apr8g2380 664 SUPERFAMILY Protein kinase-like (PK-like) 316 602 IPR011009 -
Apr8g2380 664 ProSiteProfiles Gnk2-homologous domain profile. 18 124 IPR002902 -
Apr8g2380 664 Gene3D - 18 123 IPR038408 -
Apr8g2380 664 Gene3D - 134 237 IPR038408 -
Apr8g2380 664 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 4 647 - -
Apr8g2380 664 SMART serkin_6 332 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2380 664 ProSiteProfiles Gnk2-homologous domain profile. 130 237 IPR002902 -
Apr8g2380 664 Pfam Protein tyrosine and serine/threonine kinase 335 539 IPR001245 GO:0004672|GO:0006468
Apr8g2380 664 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Apr8g2380 664 Gene3D Phosphorylase Kinase; domain 1 298 407 - -
Apr8g2380 664 CDD STKc_IRAK 338 602 - -
Apr8g2380 664 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 647 - -
Apr8g2380 664 Gene3D Transferase(Phosphotransferase) domain 1 408 610 - -
Apr8g2380 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Apr8g2380 664 ProSiteProfiles Protein kinase domain profile. 332 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2380 Apr-Chr8 34118929 34122339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2380 4 664 Receptor kinase-like Gene Family AT4G21410 46.020 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr8g2380 PK_Tyr_Ser-Thr 7.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2380 - - gmx:113000777 860.907