Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2378 ATGGCCATGGTTTCAAAAATGCCTATATTTCTTTGTCTCCTTTTCATACTCATATTCATATCTCAAACCAACGCCCAGCCAAAATTCCTATACTATTTTTGTATCGATGACAATGGTAATTACACTGCTAACAGTACTTACCAGAACAACCTGAACACCCTTTTGTCCAACTTTTCTTCCAACACACAGATTGACTATGGTTTCTACAATTTTTCTTATGGCCATGACAGTGACAAAGTAAACGCAATTGGGTTGTGCAGAGGAGATGTTAAGCCAAATGATTGCCGTAGCTGCTTCAATGATTCCAAAGTTCTTCTCACAAAACTGTGTCCAAATCAGAAGGAGGCAATTGGGTGGTATGACAATTGCATGCTACGTTACTCCAACCGCTCAATATTTAACAGAAATGAAAATTCTCCTGGTTTCTATATGAGAAATAATGGTAATGCAACAGATGTTAATCAATTCAACCAAGTGCTGAGAGACCTGCTAGGTAGCCTCATAAGCAAAGCTTCATCAGGGGACTCCAAGCGTAAGTTTGCTGCAGCAAATATGACAGGACCAGGGTTTCAAACTATATATGGTCTTGTTCAGTGTACACCTGACTTGTCTGAGCAACAATGCAGTTCATGCTTGGTTGGGGCTATGTCAGAAATTCCACAATGTTGTGATAGCAAGAAAGGTGGTAGAATTGGAAGACCCAGTTGTAACTTCAGATACGAGATATACCCTTTCTATGATCTCACCAATGTTGAAATACTACAAGCACCAGCACCAACAGTGTTTGCTCTTAGTCCTTCATCAACAGATGCCTTGTCAACCAAAGGGAAAAGCAAGACATCACGTAATGTAATATTAATAGTGGTGTCAATCGTTGCCTTTGTCACACTAGTCGTCCTTGTCTGCATCTATTTAAGAAAGAGGAGATCATGGAAACATATTGGAGATGATGGTAAAAATGGTGGCGAAATTAGATCAACTGAGACATTGCAATTGGACTTTGCCACCATTATGGCAGCTACCAACAACTTTTCTGATGCATGGAAGCTAGGACAAGGAGGATTTGGATCAGTTTACAAGGGTATGCTTTCCAATGGTCAGGAAGTTGCAGTGAAAAGGTTATCCAGGAATTCCATTCAAGGAGACATAGAGTTTAAGAATGAAGTGCTGTTAGTAGCCAAGCTTCAACACCGAAATTTGGTTAAGCTACTAGGATTTTGTTTGGAAAGAAGAGAAAGGGTACTGGTCTATGAATTTGTTCCCAATAAAAGCTTAGATTTCTTCATTTTTGATCAAACCAAATGTGCTCAATTGGATTGGGAAAGGAGGTACAAAATCATAGGTGGCATTGCTAGAGGCCTTCTTTACCTTCATGAAGATTCACGTTTGAGGATTATTCACCGTGATCTGAAGGCAAGCAACATTCTATTGGATGCAGAGATGAACCCTAAGATATCAGATTTTGGCATGGCAAGATTATTTGAAATGGATCAAACTCAGGGCAATACAAATAGAATTGTCGGAACCTATGGATATATGGCACCTGAGTATGCTATTCATGGACTATTCTCAGCAAAGTCTGATGTTTTTAGTTTTGGAGTATTGGTTCTGGAGATTGTTAGTGGCATGGAGAAATTGGAGGGAAGGGACAGCCTCAAGCATTGTTGA 1668 0.3975 MAMVSKMPIFLCLLFILIFISQTNAQPKFLYYFCIDDNGNYTANSTYQNNLNTLLSNFSSNTQIDYGFYNFSYGHDSDKVNAIGLCRGDVKPNDCRSCFNDSKVLLTKLCPNQKEAIGWYDNCMLRYSNRSIFNRNENSPGFYMRNNGNATDVNQFNQVLRDLLGSLISKASSGDSKRKFAAANMTGPGFQTIYGLVQCTPDLSEQQCSSCLVGAMSEIPQCCDSKKGGRIGRPSCNFRYEIYPFYDLTNVEILQAPAPTVFALSPSSTDALSTKGKSKTSRNVILIVVSIVAFVTLVVLVCIYLRKRRSWKHIGDDGKNGGEIRSTETLQLDFATIMAATNNFSDAWKLGQGGFGSVYKGMLSNGQEVAVKRLSRNSIQGDIEFKNEVLLVAKLQHRNLVKLLGFCLERRERVLVYEFVPNKSLDFFIFDQTKCAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDAEMNPKISDFGMARLFEMDQTQGNTNRIVGTYGYMAPEYAIHGLFSAKSDVFSFGVLVLEIVSGMEKLEGRDSLKHC* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2378 555 SUPERFAMILY Protein kinase-like (PK-like) 327 548 IPR011009 -
Apr8g2378 555 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 543 - -
Apr8g2378 555 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
Apr8g2378 555 ProSiteProfiles Protein kinase domain profile. 344 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2378 555 Pfam Salt stress response/antifungal 148 242 IPR002902 -
Apr8g2378 555 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Apr8g2378 555 Gene3D - 26 131 IPR038408 -
Apr8g2378 555 Gene3D - 141 245 IPR038408 -
Apr8g2378 555 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 543 - -
Apr8g2378 555 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Apr8g2378 555 SMART serkin_6 344 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2378 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Apr8g2378 555 Gene3D Phosphorylase Kinase; domain 1 312 419 - -
Apr8g2378 555 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Apr8g2378 555 Gene3D Transferase(Phosphotransferase) domain 1 420 554 - -
Apr8g2378 555 Pfam Protein kinase domain 347 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2378 Apr-Chr8 34109221 34112181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2378 1 542 Receptor kinase-like Gene Family AT4G05200 51.986 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr8g2378 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2378 - - gmx:113000773 869.766