LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g2377	ATGCATATCATCAACTTCTCTATAACCCCATTAGCACTTTTCTCTGCGTTTCTTTTGCTCATCCACGCAAGGGAATCAGATCCCCCTTACACTGTCCATCAATGCAAAAACCAAACATTTTACCAACCCAACACCACATTTCAGTCCAACTTAAATACCCTCTTCTCTTCTCTCATCTCCAACTCTTCTCTTCAATCCAACAACGGTTTCTACACAACCACTGTGGGTCAAAACACCACTGACGTCGTCAACGGTCTTTTCCTCTGCCGTGGCGACGTCAACGCCACCCTTTGCCACGGCTGCGTCGCCACCGCAGCAAACGACATAACACGCCTCTGTCCGAACGACAGAGAGTCCATAATCTGGTCCGATTTTTGCATGTTGCATTACTCCGAAAGCACCCTCAACAACAACATCGATACTGGACTTTCCGTGCACGACACCCGTGTGATAAACTCGAACATTGACAAGTTCAATCAGTTATTCGCTGAGTTACTTTACGGTTTGGCGGAGAAAGCTGCAGCCGCAGTGGAGATAAAGTATGCTGCAGGCGAAAAGGGTTTTACGAGTACACAGACACTGTACGGTATGGCACAGTGCGTGCCCGAGTTAACGAGAGAAGGATGTACCGCGTGCTTACAAAGCGCTATTAGAAGTCTTACCATGTACAGTGTACGAGCAGAGTTTATGTTTCCGGCATGTCATATCAGATATCAATTGTATCCATTTTTGTATAATACCACTTCAGAGATGCCACGTGTTCCTTCCCCATCTTCAGCTACGAGTTATTTTATGTGTGAAGATGAGTCTTTGCGTTTTGACTTGGCTACAATAGAAGCTGTCACAAATGGATTCTCAGATGAACATAAAATAGGCGAAGGTGGATTTGGTGAGGTTTATAAGGGTACCCTTCCGAATGGACAAGAGATAGCTGTGAAGAGGCTATCAAGAAGTTCCCGGCAGGGTGACTTGGAATTCAAGAACGAGGCTTCACTTGTTGCACAGCTTCAACATAGAAATTTAGTTAGGCTGTTAGGATTTTGCTTGGAGAGAAAGGAGAGGATACTTGTTTATGAATTCATACCAAATTCCAGCCTTGACAACTTTCTATTTGATCGTGAGAACGAAGAAGAGCTAGACTGGGCAAGACGTTACCAAATTATAGTTGGAATAGCTCGAGGAATGAAGTATCTCCATGAAGATTCTAGGCTAAGAATAATACATCGCGATCTCAAGGCTAGTAATGTTCTATTGGATGCAAACATGAATCCAAAGATTTCAGATTTTGGCTTGGCAAAGATTTCCCCTAATGATCAAAGTCAAGTAAATGCAGCAACAAGAAGGATAGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATGCATGGAAAATATTCTGTGAAATCCGATGTGTTCAGCTTTGGAGTCTTGGTTTTGGAGATTATTCATGGCAAGAAGAACTCAAGTTATTATCTATCACATGAAAGCGATGACCTTTTGAGCATTACTTGGAAGAATTGGACAAATCAGACACCGTTCTTGATTTTGGATCCAAGATTGAATGGCTCATATTCTCGAAATGAAGTTCGGAGATGCATCCAGATCGCTTTATTATGCGCTCAAGAAAACCCAGTTGATAGGCCTTCAATGGCGACAATAGTAATTGCGTTGAGCAGTTATTCAATAACATTAGCGCAACCTCGACAACCAGCATCTTATCTGCGATGGAGAACAGCACCAGACAGATTAAGACACCAACGTGATTCTGATGGGAACAGGCGCACAACCCCGTCGTGTCCGAATGATTCTTTGATTACTGAAGTATATCCTCGCTAA	1839	0.4307	MHIINFSITPLALFSAFLLLIHARESDPPYTVHQCKNQTFYQPNTTFQSNLNTLFSSLISNSSLQSNNGFYTTTVGQNTTDVVNGLFLCRGDVNATLCHGCVATAANDITRLCPNDRESIIWSDFCMLHYSESTLNNNIDTGLSVHDTRVINSNIDKFNQLFAELLYGLAEKAAAAVEIKYAAGEKGFTSTQTLYGMAQCVPELTREGCTACLQSAIRSLTMYSVRAEFMFPACHIRYQLYPFLYNTTSEMPRVPSPSSATSYFMCEDESLRFDLATIEAVTNGFSDEHKIGEGGFGEVYKGTLPNGQEIAVKRLSRSSRQGDLEFKNEASLVAQLQHRNLVRLLGFCLERKERILVYEFIPNSSLDNFLFDRENEEELDWARRYQIIVGIARGMKYLHEDSRLRIIHRDLKASNVLLDANMNPKISDFGLAKISPNDQSQVNAATRRIVGTYGYMSPEYAMHGKYSVKSDVFSFGVLVLEIIHGKKNSSYYLSHESDDLLSITWKNWTNQTPFLILDPRLNGSYSRNEVRRCIQIALLCAQENPVDRPSMATIVIALSSYSITLAQPRQPASYLRWRTAPDRLRHQRDSDGNRRTTPSCPNDSLITEVYPR*	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g2377	612	Gene3D	-	144	243	IPR038408	-
	Apr8g2377	612	Gene3D	-	29	134	IPR038408	-
	Apr8g2377	612	ProSiteProfiles	Gnk2-homologous domain profile.	29	135	IPR002902	-
	Apr8g2377	612	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	28	257	-	-
	Apr8g2377	612	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	258	611	-	-
	Apr8g2377	612	SUPERFAMILY	Protein kinase-like (PK-like)	270	581	IPR011009	-
	Apr8g2377	612	Gene3D	Transferase(Phosphotransferase) domain 1	361	570	-	-
	Apr8g2377	612	Pfam	Salt stress response/antifungal	35	132	IPR002902	-
	Apr8g2377	612	Pfam	Salt stress response/antifungal	155	240	IPR002902	-
	Apr8g2377	612	ProSiteProfiles	Gnk2-homologous domain profile.	139	243	IPR002902	-
	Apr8g2377	612	CDD	STKc_IRAK	291	555	-	-
	Apr8g2377	612	Gene3D	Phosphorylase Kinase; domain 1	247	360	-	-
	Apr8g2377	612	SMART	serkin_6	285	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr8g2377	612	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	406	418	IPR008271	GO:0004672\|GO:0006468
	Apr8g2377	612	ProSiteProfiles	Protein kinase domain profile.	285	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr8g2377	612	Pfam	Protein tyrosine and serine/threonine kinase	288	556	IPR001245	GO:0004672\|GO:0006468
	Apr8g2377	612	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	258	611	-	-
	Apr8g2377	612	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	28	257	-	-
	Apr8g2377	612	ProSitePatterns	Protein kinases ATP-binding region signature.	291	313	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g2377	Apr-Chr8	34093507	34096254	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g2377	30	572	Receptor kinase-like Gene Family	AT4G23230	45.634	4.07e-175	509

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Apr8g2377		PK_Tyr_Ser-Thr	4.2e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g2377	-		-	aprc:113871855	1192.18