LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g2371	ATGTGCATACTAGCAGCCTACCAATTATTTCTTTCTCGCAGTGTAGAAAATTTGCTGCATAACAGAATCATGATTGCTATAATTATCACGCTTGTTCTCGCCGTAACAGAAACCTCTGCATCTGTTTTCAACAACGTTAGCTGCACGAGCAACCAAACTTTCACTCCAAACACCACCTTTAACACCAACCTCAACATCCTTCTCTCTTCCCTTTCCTCCAACGTCACCAACAATGTTAGATTCTTCAACGCTACAACAGGGACAGAAGATTCGGACGCCGTCTACGGTCTCTACATGTGCCGTGGAGACGTGCCATTTGCTTTGTGCAGAGAGTGTGTGGGTTTCGCAACGCGAACAATAGCCGCATCGTGTCCCACATCAAAAGAAGCTGTGATTTGGTACAACGAGTGCTTGTTGCGTTACTCCTATAGATTGTTCTTCTCTAAAATGGAAGAGTGGCCAAGGTACCAGATCAATATCCCCTTGGGGGACCCTGTGCTCTTGCACAGTCGTGGCTTCTACACCGCATTAGGATCCATTTTCAGTGAACTACCTAACCAAGCAGCACTGGCTCTCGGTGGGTTTAATGGATTTGCTGTTAAGCAAGAAAACGCTTCCTCCAGCGTGACACTGTACGCCCTCGCTCAGTGCACGCCGGACTTGTCCTCCCGCGACTGTGAACGGTGTGTCTCCGATGCGGCGGCGGAACTCCCCAAGTTCTGTTGCGGAGGTAGCATAGGGGCAAGTGTTCTGTTTCCTAGTTGTATTGTTCGGTATGAAACATATCCCTTTTATCAGCATTCGGAACAGGCAATGATCAAGGGTGGAAGAAATATTCGAACTGAAGTGATTGCGGTCGCTGTTGTCTTGGTTGTCGCTTTGGCGATGCTATTTTGCTTTGGCTACTGCTTCTTCCAAATGAAAGCGAGAAAGAAACGCAAGGCCAGTGTCAGAGAACACTTTGGGCCTGAAATCATCACCCTGGAGTCCTTGCAATTTGATTTGGCTACAATTGAAGGAGCCACAAATAATTTTACTGAAGGCCGCAGGATTGGCAAAGGAGGTTATGGAGAAGTCTACAAGGGAATCCTTCCTGACGGAGAAGAAATAGCTGTAAAGAGACTGTCAACAAATTCTAAGCAAGGAGAGGAGGAATTCAAAAACGAAGTGTTGTTAATAGCTAAACTTCAACATAAAAATTTGGTGAGATTAATAGGATTCTGCCAAGAAGACCAAGAAAAAATACTGATTTATGAATACGTGCCTAACAAGAGCCTTGATCACTTCTTATTCAATCCCCAAAGACGTTTAACTTGGTCCGAACGGTATAAAATCATCAAAGGAATTGCACGAGGAATTCTTTATCTTCATGAAGATTCTCGTCTCAAGATAATACACCGTGATATCAAACCAAGCAATGTTCTGTTAGATAACAGCATGAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTATCTACAGATCAAATTCAAGGATGTACGAATAGAGTTGTGGGCACATATGGTTATATGTCTCCTGAATATGCAATGCATGGAAAATTTTCAGAGAAGTCTGATGTATTCAGTTTTGGAGTTATGGTTCTTGAAATTATTAGCGGGAAGAAGAATTCTTGTTCTTTTGAATCTTGTCGTGTTGATGACCTCTTGAGTTATGCATGGAATGAATGGAGGAATGAATCACCATTTCAATTGGTGGACCCAATTCTGCAAGAATCTTATTATCCAAACGAGGTTGAAAAGTGTATGCAGATTGGTTTATTGTGTGTGCAAGAAAATCCAGATGACAGGCCTACAATGGGAACCATTGTTTCATATCTTAACAACCCTTCAGTTGAAATGCCATTCCCGCTTGAACCAGCATTTTTCATGCATGGCAGAAAGAGAAGACAGTCAGCTGATCATGCATCAGTTTCAGGTCACTCCACTAATCATTCTTTCTCGTCCTCTGTAAATAAGATGTCTACGACTAATTTCTTCCCTCGATAG	2010	0.4294	MCILAAYQLFLSRSVENLLHNRIMIAIIITLVLAVTETSASVFNNVSCTSNQTFTPNTTFNTNLNILLSSLSSNVTNNVRFFNATTGTEDSDAVYGLYMCRGDVPFALCRECVGFATRTIAASCPTSKEAVIWYNECLLRYSYRLFFSKMEEWPRYQINIPLGDPVLLHSRGFYTALGSIFSELPNQAALALGGFNGFAVKQENASSSVTLYALAQCTPDLSSRDCERCVSDAAAELPKFCCGGSIGASVLFPSCIVRYETYPFYQHSEQAMIKGGRNIRTEVIAVAVVLVVALAMLFCFGYCFFQMKARKKRKASVREHFGPEIITLESLQFDLATIEGATNNFTEGRRIGKGGYGEVYKGILPDGEEIAVKRLSTNSKQGEEEFKNEVLLIAKLQHKNLVRLIGFCQEDQEKILIYEYVPNKSLDHFLFNPQRRLTWSERYKIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNSMNPKISDFGMARMVSTDQIQGCTNRVVGTYGYMSPEYAMHGKFSEKSDVFSFGVMVLEIISGKKNSCSFESCRVDDLLSYAWNEWRNESPFQLVDPILQESYYPNEVEKCMQIGLLCVQENPDDRPTMGTIVSYLNNPSVEMPFPLEPAFFMHGRKRRQSADHASVSGHSTNHSFSSSVNKMSTTNFFPR*	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g2371	669	ProSitePatterns	Protein kinases ATP-binding region signature.	351	373	IPR017441	GO:0005524
	Apr8g2371	669	ProSiteProfiles	Gnk2-homologous domain profile.	42	146	IPR002902	-
	Apr8g2371	669	ProSiteProfiles	Gnk2-homologous domain profile.	154	264	IPR002902	-
	Apr8g2371	669	SUPERFAMILY	Protein kinase-like (PK-like)	331	641	IPR011009	-
	Apr8g2371	669	Gene3D	Transferase(Phosphotransferase) domain 1	421	621	-	-
	Apr8g2371	669	MobiDBLite	consensus disorder prediction	640	669	-	-
	Apr8g2371	669	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	22	653	-	-
	Apr8g2371	669	SMART	serkin_6	345	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr8g2371	669	CDD	STKc_IRAK	351	616	-	-
	Apr8g2371	669	ProSiteProfiles	Protein kinase domain profile.	345	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr8g2371	669	Pfam	Salt stress response/antifungal	172	262	IPR002902	-
	Apr8g2371	669	Pfam	Salt stress response/antifungal	48	142	IPR002902	-
	Apr8g2371	669	MobiDBLite	consensus disorder prediction	643	669	-	-
	Apr8g2371	669	Pfam	Protein tyrosine and serine/threonine kinase	347	614	IPR001245	GO:0004672\|GO:0006468
	Apr8g2371	669	Gene3D	-	41	146	IPR038408	-
	Apr8g2371	669	Gene3D	-	168	264	IPR038408	-
	Apr8g2371	669	Gene3D	Phosphorylase Kinase; domain 1	305	420	-	-
	Apr8g2371	669	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	22	653	-	-
	Apr8g2371	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g2371	Apr-Chr8	34046396	34050476	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g2371	24	669	Receptor kinase-like Gene Family	AT4G05200	43.666	0.0	552

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Apr8g2371		PK_Tyr_Ser-Thr	6.4e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g2371	-		-	gmx:100791642	1009.98