Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2354 ATGGCGCAACAACTAGACTCCACCGTCGATGTTCTAAGCGTAGACGATTTTTACTTTTCTGCTCTATTCGACGACGATCAAAACGACATGGTCCCTATTTCAGACGACAAGTACGCTGAAGAGTTGCAGTTTCAGGAGACCCTCATGGCCTCTGTCATCGCTTCCCAAATCACCACCAAAGCCTTATCATCATCACCAATCCTCTGCTTAACATCATCATCATCATCGATGCCGTCTTCATCGAAGGCCGTTGAAATAACCCTTTCTCCCAAACCAGAGCAAATAGGGTTGATGACCGAAGAAGCCGGTGAACCATGTTCGTCGCTCATCCTATGCGAGATCTGTGCCGAAGCAAAAGAGACTGATGAGATGTTTAGAAACCAGAGATGCGACCACTCTTTCTGCTCCCAGTGTGTGATCAAACATGTGGCCACCAAAATCCAAGACAAGATAACGGTTGTTTCTTGTCCCGGTTTGAACTGCAAGGGTGTGTTGGAAGTGGACGCTTGCATGGCAATGCTTCCAAAGGAACTTCTTGATAGGTGGAGCGATGCACTGTGTGAGGCTCTTTTTCTTACGGCTCACAAATTCTATTGTCCTTTCAGGGACTGTTCTGCTATGCTTCTGGTTGATGGTGAAGGGGGAAAAGATATAAGGGAATCTGAATGCCCTTTTTGCCATAGACTCTTCTGTGCGAGGTGTTATGTTCCTTGGCATGCTGGGGTTGGGTGTGAGGAGTTTGAGACACTGAATGAGGATGAGAGAGGGAGGGAAGATTTGCTTGTTAGAGAGTTTATTAATAAGAAGAAATGGAGTAGGTGTCCCCAATGCAAGTTCTTTGTCGAAAAGACTGAAGGCTGTTTGCACATCACCTGCAGGTGCCAATTTGAGTTTTGCTATGCGTGTGGGGAACAATGGACTTCTACTCATGGGGGATGCCAGGGAGAATAG 951 0.4669 MAQQLDSTVDVLSVDDFYFSALFDDDQNDMVPISDDKYAEELQFQETLMASVIASQITTKALSSSPILCLTSSSSSMPSSSKAVEITLSPKPEQIGLMTEEAGEPCSSLILCEICAEAKETDEMFRNQRCDHSFCSQCVIKHVATKIQDKITVVSCPGLNCKGVLEVDACMAMLPKELLDRWSDALCEALFLTAHKFYCPFRDCSAMLLVDGEGGKDIRESECPFCHRLFCARCYVPWHAGVGCEEFETLNEDERGREDLLVREFINKKKWSRCPQCKFFVEKTEGCLHITCRCQFEFCYACGEQWTSTHGGCQGE* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2354 316 SUPERFAMILY RING/U-box 184 248 - -
Apr8g2354 316 SUPERFAMILY RING/U-box 255 313 - -
Apr8g2354 316 Pfam IBR domain, a half RING-finger domain 260 313 IPR002867 -
Apr8g2354 316 Pfam IBR domain, a half RING-finger domain 194 244 IPR002867 -
Apr8g2354 316 SMART ibrneu5 254 313 IPR002867 -
Apr8g2354 316 SMART ibrneu5 180 244 IPR002867 -
Apr8g2354 316 ProSitePatterns Zinc finger RING-type signature. 130 139 IPR017907 -
Apr8g2354 316 ProSiteProfiles TRIAD supradomain profile. 108 316 IPR044066 -
Apr8g2354 316 SUPERFAMILY RING/U-box 108 189 - -
Apr8g2354 316 Gene3D - 242 315 - -
Apr8g2354 316 ProSiteProfiles Zinc finger RING-type profile. 112 157 IPR001841 -
Apr8g2354 316 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 305 - -
Apr8g2354 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 190 IPR013083 -
Apr8g2354 316 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 305 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2354 Apr-Chr8 33943931 33945163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2354 112 303 C3H Transcription Factor Family AT2G19610 28.500 1.27e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2354 K11975 - qsu:112001859 389.037