Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2352 ATGTATCAGACAAACGTGTACGATCCCCACCAAAACATGATTGACATGTCGTCGCACAAGACATCCTCGGATAGTGAATTGGGAAGGAACAGAATGGGAGATGATTACGAGATTAGATCTGGCAATGAGATAATGGAAGCTCCTCCATCTGGTGACGACCAAGATCCCAACCAACGACCGAAAAAGAAGCGTTACCACCGCCACACACAACACCAAATACAAGAAATGGAAGCCTTCTTCAAGGAGTGCCCTCACCCAGATGACAAGCAAAGGAAAGAGCTGAGTCGTGAGCTTGGGTTAGAACCTTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGCACCCAAGTGAAGGCTCATCAAGAACGACAGGAGAACAGTATTTTGAAGTCTGAGAACGAAAAGCTTCGTGCAGAGAATAATAGGTACAAGGAAGCCCTAACTAATACTACATGCCCTAACTGTGGAGGCCCGGCTGCGCTTGGGGAAATGTCCTTTGATGAGCAGCACTTAAGGATCGAGAATGCACGATTAAGAGAAGAGATTGATAGGATGTCAGGAGTAGCAGTCAAATATGGAAAACCTGCGACTTCTTACTATAACCTGCCATCTCAAAACAACATGGCTTCGCGGTCGCTTGATCTGGGAGTTGGTAACTATGGAGCACAGTCAGGGATGGTAGGGGAAATGTATGGTGGCAATGACCTTCTAAGGACACTCCCAGTTCCTACTGATTCGGACAAACCCATGATTGTGGAGCTCGCTGTTGCAGCAATGGAGGAACTCACAAGGATGGCTCTCGCTGGAGACCCTCTATGGGTCCCTGGTAACCATGGCACTGAGCTTCTAAATGAAGATGAATACTTGAGGATTTTCCCTAGGGGAATAGGTCCTAAACCTTTGGGGCTAAAATCCGAAGCTACAAGGGAATCTGTTGTGGTTATCATGAATCATACTAACCTCGTTGAGATCCTTATGGATGTGAATCAATGGTCGACCGTGTTCTGTGGTATTGTTTCAAGAGCAATGACGCTTGAAGTCCTGTCAACTGGAGTGGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAGGTCCCTTCACCGCTTGTTCCTACTCGTGACAACTATTTCGTAAGGTACTGTAAGCAGCACTCAGATGAATCATGGGCTGTGGTTGATGTTTCCTTGGATCATCTGCGACCCAGTGCAATCTCAAGAAGCCGAAGACGACCCTCTGGTTGTTTAATACAAGAATTGCCTAATGGTTACTCCAAGGTTACATGGGTTGAACATGTAGAAGTGGATGATAGAGCTGTGAATAGTCTTTATAAACTCCTAGTTAATTCTGGCCTTGCCTTTGGAGCTAGAAGATGGGTGGCATCATTGGATCGACAATGCGAACGTCTTGCTAGTGCCATGGCTACCAACATACCAGCAGGAGATCTTTGTGTGATAACCAGTCATGAGGGAAGGAAAAGTATGCTGAAGCTGGCAGAGAGAATGATAATGAGTTTTTGTACTGGTGTTGGTGCTTCTACAGCACATGCTTGGACAGCCCTAACAACTGGTTGTGATGATGTAAGGGTCATGACCAGAAAGAGTATGGATGAACCAGGTAGACCTCCGGGTATAGTTCTCAGTGCAGCAACTTCTTTGTGGCTCCCAGTTTCTTCAAAGAGGGTTTTTGATTTTCTTCGAGATGAAAACTCAAGAAGGGAGTGGGATATTCTCTCCAATGGGGGTCTGGTTCAAGAAATGGCACACATAGCAAATGGTCGTGATCCTGGGAACTGTGTCTCTTTACTTCGTGTCAATAGTCCAAATTCCAGCCAAAGCAATATGCTTATACTTCAGGAGAGTTGCACTGATTCTACAGGCTCATACGTAGTTTATGCTCCTGTTGACATAGTTGCCATGAATGTAGTGTTGAGTGGTGGAGATCCAGATTATGTTGCCCTGCTACCCTCGGGTTTTGCTATTCTTCCTGATGGGCCTGGACTAAACAACTTAGGGCCCATACTTGATGTTGGATCTGGAGGTTGTTTACTAACTGTTGCATTTCAGATATTGGTTGATTCAGCTCCTACAGCAAAATTATCTGTTGGTTCAGTGACCACTGTTAACAGTTTAATTAAGTGCACAGTTGAACGGATCAAAGCTGCAGTGGTGTGA 2181 0.4553 MYQTNVYDPHQNMIDMSSHKTSSDSELGRNRMGDDYEIRSGNEIMEAPPSGDDQDPNQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQVKAHQERQENSILKSENEKLRAENNRYKEALTNTTCPNCGGPAALGEMSFDEQHLRIENARLREEIDRMSGVAVKYGKPATSYYNLPSQNNMASRSLDLGVGNYGAQSGMVGEMYGGNDLLRTLPVPTDSDKPMIVELAVAAMEELTRMALAGDPLWVPGNHGTELLNEDEYLRIFPRGIGPKPLGLKSEATRESVVVIMNHTNLVEILMDVNQWSTVFCGIVSRAMTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRDNYFVRYCKQHSDESWAVVDVSLDHLRPSAISRSRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVNSLYKLLVNSGLAFGARRWVASLDRQCERLASAMATNIPAGDLCVITSHEGRKSMLKLAERMIMSFCTGVGASTAHAWTALTTGCDDVRVMTRKSMDEPGRPPGIVLSAATSLWLPVSSKRVFDFLRDENSRREWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSPNSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNNLGPILDVGSGGCLLTVAFQILVDSAPTAKLSVGSVTTVNSLIKCTVERIKAAVV* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2352 726 SMART HOX_1 60 123 IPR001356 GO:0003677
Apr8g2352 726 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Apr8g2352 726 SUPERFAMILY Bet v1-like 492 722 - -
Apr8g2352 726 Coils Coil 118 148 - -
Apr8g2352 726 CDD homeodomain 62 120 IPR001356 GO:0003677
Apr8g2352 726 SUPERFAMILY Bet v1-like 243 473 - -
Apr8g2352 726 MobiDBLite consensus disorder prediction 1 70 - -
Apr8g2352 726 Gene3D - 284 470 IPR023393 -
Apr8g2352 726 SMART START_1 252 471 IPR002913 GO:0008289
Apr8g2352 726 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Apr8g2352 726 Pfam START domain 253 471 IPR002913 GO:0008289
Apr8g2352 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 25 725 - -
Apr8g2352 726 CDD START_ArGLABRA2_like 247 470 - -
Apr8g2352 726 MobiDBLite consensus disorder prediction 1 21 - -
Apr8g2352 726 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Apr8g2352 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 725 IPR042160 -
Apr8g2352 726 Gene3D - 50 135 - -
Apr8g2352 726 ProSiteProfiles START domain profile. 243 474 IPR002913 GO:0008289
Apr8g2352 726 MobiDBLite consensus disorder prediction 22 41 - -
Apr8g2352 726 SUPERFAMILY Homeodomain-like 47 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2352 Apr-Chr8 33908880 33915892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2352 1 725 Homeobox Transcription Factor Family AT4G21750 74.967 0.0 1150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr8g2352 START 1.3e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2352 K09338 - qsu:112016283 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0366 7 9457695 9461236 Apr8g2352 8 33908880 33915892 PCT