Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2350 ATGTACTCTCAAAATCTGATACTCCCTCCTGAAAACCCTAGACCCGCTGCTTTTGCTTCAAAACCGATGAACAATGAGGTCGCAATCGCGCAGAAACCACCCCCTTCGATACTCGTTGGTCGCTTCAAGGCTCTTCTCAAACAACGCGACGACGAACTCAGGGTCTCTCCCAGCGCCCCCGTGCCGCATCCAACCACCGACGAAATCGTGCAGCTCTACGAGTTGCTGTTGTCGGAACTCACTTGCAATTTGAAGCCCATCATCACCGATCTCACCATCATTGCCGAACAGCAGAGGGAGCATGCCAAGGGCATCGCTGATGCCATATGCGCTCGGATTCTTGAGGTCCGTCTCCATTGCCGCAGAAAGTTCTTCTTCTTTTACCCCTCCAGATTTGTTCCTGCAGATCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATCGTCAAGAATTTTGGTCAGGAATATGTTAGATACTTCGCTTTACGTCTGCCAGAAGTTTTCTCTGAGGCATATAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGCCATCTTTTTGGTACCTGGTCAAAAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCAGAGTTGCAGTTTTCTCAAGGAGTTAATACTCAACCGTCCACCATGAATCCTGTCAGGGCATCTGAATCTCCTCGACCAAGTCATGGCATACATGTTAATCCGAAATACTTGCGTCAGTTGGAGCACTCAACTGTGGATAGTGTTGGTGGTGAAAAGTTGGATTCATCTGGAAATGCTAGTAATACGAATTTTGGCCTTGTTGCTAGCAAGACGCATCAATTTTTATCCAGCAGCAGCAGGCTTGGATTATCCTTGTCCCCTTCAAGAATTGCACTTGATAGGCCTATGTCTTCATCTATAGATGAATATGCAGCTGACAACTCTGCTGGCAGGATAATTGATAGAGAGTCTCCTCATTCCACTGTTGATTATGGAGTGGCCAAAGCAAATGTAGAGTTGAGTGAATGGCAGCGAAAACAGTACTCTGGTGATGGTCGAAATCGACTTCAAACTTCTACATACAACCTTAATAATGGACATCAGCGTCAAAATCCTAGAGCTTTAATTGATGCATATGGCAGTGATAAAAGCCAAGAAACTTCAAGCAGTAAGCCTTTGTTAGTTGAACGGCTGGATAGAAATGGTATAGACAACAAGGTGTTGTCAACGTCATGGCAGAATACTGAAGAGGAGGAGTTTGACTGGGAAGACATGAGTCCAACATTAATAGACCATAGTAGGAATAACAGTTTCTTGCCTTCAGGAGTTGGTTTCTCCAGGGAAAGGCCTGTTATTGTTGCAACTAATGCAATTTCATTAGAGCAGGATACCAGGAAGGGTTGGTCTAGGGGATCTCATCCTCCTTCTGTAGATGATTCTTCTACTATAGCAGAAGATGCATTTGTCTCCTCTGCTTATGGTCGTGCACCCCCGGGTCAAGTATCTGGATTCCAAAATCAAATAAAGCATAGTCTGGGATCAGGTCAACCTCATGATGCTTGGAAGATTTCTCACCATCCGTCTAACTTTAATACTAGGGGGCGAGTAAGGGGTCTTATGATACCTCCTATTGATAACATTCGCAATCAAGATTCAAACCGATATCGGGTTCGACCTGTTGTGTCAAGGATGGTTTCTGGTCTTGTATCTAATGCTGAGGCTCATTCATCAGTTTTGCCTGCATCTTTTGAAATAAGGCCTTCTGTAAATGTGCATGCCACTCGTCCTCCCACCTTAAATCCAATATCTACATTGCAAAAACATGTGAGAAGTCCATTTGAAGCAATAAATACTAGTAACCCTGTTGTGAACCATGTTGTAAATAAATCTTCATTCATGCCTGAACTATCAGTTGACAATGTTGAGAACAAGGGTACAGGTACTTCAACGATGCATCAGTTGCCTAATCAGCTTGCAGGACTGATTACGTCCAAACAGCAAAATCATGGGCAAGTGCCACAACTGCAGTTTTTTCCATCACAGGATCCATCAACCTCACAATTTAATCGTGGAAGTTCTTTGCAAGGACATGGTGCTTCTATAAGTACAGCCATGTCAAATCCATTGCCTGGTATACAATTCCCTTTACGGGTGCCTAATATTGCAAATAACCCTTTACATTTACAGGGTGGAGCTCTTCCACCTTTACCTCCAGGTCGCCCTCCTACTCCATCACAAATGATACCTCATCCAAATGCTAGTCCATTTATGTCAAGCCAACAACCAGCTGTTGGATATACTAATTTAATTAATTCACTTATGTCTCAAGGTGTAATCTCATTGGCTAACCAGCCTGCAATGCAGGACTCTGTTGGAACTGAGTTCAATCCAGATATTCTGAAGGTTCGTCATGAGTCTGCAGTCAATGCCTTATATGGTGATCTCCCTAGACAGTGCACAACTTGTGGGCTCCGTTTCAAATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAGTCGTAAACAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCAGGTTTTTTGCCTACAGAAACCATAGAAGAGAGTAAAGATCATGAAGAGTTGGCAGTGCCAGCAGAAGAGGACCAGAATACATGTGCATTATGTGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAAGGGAGCTGTCTACCTGTATGCACCAACGGGAACAACAGCAGGCATGGACAGGTCACAGTTAGGCCCCATAATTCACGCTAAATGCAGATCAGAATCTAATATGCACCCCTCTGAAGATCTTGGGCCGGATGAAAGGGGTGCCGATGAAGAGGGTTCTCAAAGAAAACGAATACGAAGTTGA 2949 0.4429 MYSQNLILPPENPRPAAFASKPMNNEVAIAQKPPPSILVGRFKALLKQRDDELRVSPSAPVPHPTTDEIVQLYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVRLHCRRKFFFFYPSRFVPADQKLPSLYLLDSIVKNFGQEYVRYFALRLPEVFSEAYRQVQPSLHPAMRHLFGTWSKVFPPSVLRKIEAELQFSQGVNTQPSTMNPVRASESPRPSHGIHVNPKYLRQLEHSTVDSVGGEKLDSSGNASNTNFGLVASKTHQFLSSSSRLGLSLSPSRIALDRPMSSSIDEYAADNSAGRIIDRESPHSTVDYGVAKANVELSEWQRKQYSGDGRNRLQTSTYNLNNGHQRQNPRALIDAYGSDKSQETSSSKPLLVERLDRNGIDNKVLSTSWQNTEEEEFDWEDMSPTLIDHSRNNSFLPSGVGFSRERPVIVATNAISLEQDTRKGWSRGSHPPSVDDSSTIAEDAFVSSAYGRAPPGQVSGFQNQIKHSLGSGQPHDAWKISHHPSNFNTRGRVRGLMIPPIDNIRNQDSNRYRVRPVVSRMVSGLVSNAEAHSSVLPASFEIRPSVNVHATRPPTLNPISTLQKHVRSPFEAINTSNPVVNHVVNKSSFMPELSVDNVENKGTGTSTMHQLPNQLAGLITSKQQNHGQVPQLQFFPSQDPSTSQFNRGSSLQGHGASISTAMSNPLPGIQFPLRVPNIANNPLHLQGGALPPLPPGRPPTPSQMIPHPNASPFMSSQQPAVGYTNLINSLMSQGVISLANQPAMQDSVGTEFNPDILKVRHESAVNALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEESKDHEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYKGAVYLYAPTGTTAGMDRSQLGPIIHAKCRSESNMHPSEDLGPDERGADEEGSQRKRIRS* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2350 982 SUPERFAMILY ENTH/VHS domain 64 207 IPR008942 -
Apr8g2350 982 Pfam CID domain 84 201 IPR006569 -
Apr8g2350 982 MobiDBLite consensus disorder prediction 346 367 - -
Apr8g2350 982 MobiDBLite consensus disorder prediction 954 982 - -
Apr8g2350 982 MobiDBLite consensus disorder prediction 951 982 - -
Apr8g2350 982 Gene3D - 64 211 IPR008942 -
Apr8g2350 982 ProSitePatterns Zinc finger C2H2 type domain signature. 816 836 IPR013087 -
Apr8g2350 982 CDD CID_Pcf11 70 207 - -
Apr8g2350 982 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 35 957 - -
Apr8g2350 982 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 35 957 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Apr8g2350 982 MobiDBLite consensus disorder prediction 347 367 - -
Apr8g2350 982 ProSiteProfiles CID domain profile. 65 210 IPR006569 -
Apr8g2350 982 SMART 558neu5 68 207 IPR006569 -
Apr8g2350 982 MobiDBLite consensus disorder prediction 213 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2350 Apr-Chr8 33890519 33897253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2350 755 982 C2H2 Transcription Factor Family AT4G04885 68.996 6.72e-103 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2350 K14400 - gmx:100794796 1493.79