Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2341 ATGGCCACGGTGATGGATCAAGAAAACCAGAATGAGAAGCAGAAGAACCACACCAAGACACTCTTCTGTGCTCTCAACCTTCTCTCACGTGACCTCCCTCTCCCTTCTCACCTCCTCAACTCCGTTTCTTCCATCTACCACAACCATGACGGTGTAGGAAATTCTGAAGATGGTTTAATGGCAGATCTTGAAGATGCGCTGTTGAGTCAGCGCCCAAATTGTGTGTCGGGTTTCAAATTGGAAGGAGCAAGGAAAGATCGTTATCGGAGTCAGATTCAGCATCGTTTAAATGAGCTGGAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCTTGCTTGAACTTTTTGGACTAAAGCTAGCAGAGTTGCAGTCAAAGGTTAGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTAAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGAGCATGATGAGGTTGCGCCGTCCTCTGTACGGTGTTGGAGATTCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGACGCTGAGAGATTATCAAGAATAGAAGAAGTGGAGAAAAATCATATAGAGACTAGAAAAAGAAAATTTTTTGCAGAAATACTCAATACTGTTCGTGAGTTTCAATTACAAATTCAAGCTTCTTTGAAGAGGAGAAAACAAAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAACGACAACGGGCAACCCGGGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCCGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAGGAAACAAATAAACTACTAGTAAATTTGGGAGCTGCTGTTCAACGTCAAAAGGACTCCAAAAATCCCGATGGTATTGAACCCTTGGAAGATACCGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAATCACCTCTTGATGAAGATATAGATATGATAGATTCTGATCATAATGGTGATTCTAGTGATTTACTTGAAGGTCAGCGGCAATACAACTCTGCAATACACTCAATTCAAGAAAAGGTAACTGAGCAACCGTCTATACTTCAAGGGGGTGAATTAAGAACATACCAGATAGAGGGGCTCCAGTGGATGCTTTCTTTGTTTAACAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACAATATCACTGATAGCGTATCTTATTGAACACAAGGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAAGCTGTTCTGCCAAATTGGATCAACGAATTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGATGGAAGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTCTGTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTAAAGAAAATTCCATGGTACTACTTGATTGTAGATGAAGGGCATCGGTTGAAGAATCATGAGTCTGCTCTAGCTAGAACCTTGGACAATGGCTATCACATCAAACGAAGGCTTCTGTTGACCGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTCTGCTTAATTTTCTCCTTCCAAACATTTTCAACTCAGTTCAGAATTTTGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTCGATGTCTCTCTGACAGATGAGGAACAGCTATTGATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATATCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTGTATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTTTACAGAACTTAACAATGCAACTCAGGAAGTGTTGTAACCATCCCTATCTCTTTGTGGGAGAATATGATATGTATAGACGTAAGGAGGAGATTGTCAGAGCATCAGGAAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGGAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACATTCTGGAAATCTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCTGTCTACTACGGAAATTTAATGCCCCTGACTCCCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACTGCAGATACTGTTATAATCTTTGACAGTGATTGGAATCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTCAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCGAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGACTTTTCAACACAACATCAACAGCCCAGGACAGGAGAGAAATGTTGGAAGAGATTATGCGTAGAGGTACAAGCTCACTTGGGACTGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTATAGATCTCGACTTATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCAATTAATAAGGATGACAAAGTCAAAGATTTCAACGGTAATGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCTGATACATTAAGTGATCGGCAATGGATGAAGGCTGTGGAGAATGGGGAAGACATATCAAAGTTTTCAGTTAAAGGGAAAAGAAGAGACCACCTCTTATCCGACAGCATTGCACAAGCCAGTGATAATGCAGAGGCAGAAGAAAGTTTAGAGTTAAGGACTGATAGTGTCCCCATGGCAAATGAGGGAACATATGAAGAAGATAGTTTCCATGTGACCCCTGCCTCAAAGAGATTAAAGCCTGAAGGAACAAATTTCTTGAGACATACATACAGGGATGTTGGAAGTGGATTGAACCATGTGTTATCATGGAATACTCACAAAAAGAAGAGATCAAGCTATCTTGGCCAGGGTTCATTGTCTGAAACTAGAGGGCAGACTTCAAATGGAAGAGCAAATTGGAATTGA 3249 0.4158 MATVMDQENQNEKQKNHTKTLFCALNLLSRDLPLPSHLLNSVSSIYHNHDGVGNSEDGLMADLEDALLSQRPNCVSGFKLEGARKDRYRSQIQHRLNELEELPSSRGEDLQTKCLLELFGLKLAELQSKVRSDVSSEYWLNVKCAYPDRQLFDWSMMRLRRPLYGVGDSFAMDADDQLRKKRDAERLSRIEEVEKNHIETRKRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKNPDGIEPLEDTEADLPESDASKNGISKESPLDEDIDMIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRTYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIEHKGVTGPHLIVAPKAVLPNWINEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIPWYYLIVDEGHRLKNHESALARTLDNGYHIKRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGCLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKVKDFNGNVTGKRKRKEVVYADTLSDRQWMKAVENGEDISKFSVKGKRRDHLLSDSIAQASDNAEAEESLELRTDSVPMANEGTYEEDSFHVTPASKRLKPEGTNFLRHTYRDVGSGLNHVLSWNTHKKKRSSYLGQGSLSETRGQTSNGRANWN* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2341 1082 Pfam Snf2-ATP coupling, chromatin remodelling complex 898 957 IPR029295 GO:0042393
Apr8g2341 1082 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 861 IPR001650 -
Apr8g2341 1082 Pfam SNF2-related domain 383 671 IPR000330 GO:0005524|GO:0140658
Apr8g2341 1082 MobiDBLite consensus disorder prediction 327 349 - -
Apr8g2341 1082 Gene3D - 611 911 IPR027417 -
Apr8g2341 1082 MobiDBLite consensus disorder prediction 296 351 - -
Apr8g2341 1082 Gene3D - 349 604 IPR038718 -
Apr8g2341 1082 Pfam Helicase conserved C-terminal domain 691 804 IPR001650 -
Apr8g2341 1082 SMART SnAC_2 897 957 IPR029295 GO:0042393
Apr8g2341 1082 Coils Coil 895 915 - -
Apr8g2341 1082 CDD SF2_C_SNF 682 815 - -
Apr8g2341 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 605 IPR027417 -
Apr8g2341 1082 SMART helicmild6 720 804 IPR001650 -
Apr8g2341 1082 SMART ultradead3 376 569 IPR014001 -
Apr8g2341 1082 PANTHER ATP-DEPENDENT HELICASE BRM 28 997 - -
Apr8g2341 1082 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 392 558 IPR014001 -
Apr8g2341 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 858 IPR027417 -
Apr8g2341 1082 PANTHER SNF2/RAD54 HELICASE FAMILY 28 997 - -
Apr8g2341 1082 MobiDBLite consensus disorder prediction 1059 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2341 Apr-Chr8 33811981 33820991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2341 362 831 RAD5 or RAD16-like Gene Family AT1G02670 27.046 7.98e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr8g2341 SNF2_N 2.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2341 - - gmx:100786280 1945.24