Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2337 ATGGAGCTTCAGAGGCGCCAAGATCAGAGCCTCTCACAGAGGAAGGGGCAGAAGCGGAAGCTGGACGAGGAACTACACGAGGAGCGGCAGATCTTGGCTGCGCCGCCAACCGCCGGCGAGCGTGAGGCGCTTCTCGCCGACGTCGCCGAACAGGTGAGCGTCCTCGAGTCTACTTACACGTGGAACGAAGCCGATCGAGCAGCGGCCAAGCGCGCCACTCACGCGCTCGCCGATCTAGCGAAGAATGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCGGTTCCGGCTTTGGTTAAGCATCTTCAGGCGCCGCCTCTGAGTGATCGTGTTCAGAAGCCATTGCCGTTTGAGCATGAGGTTGAGAAAGGGAGCGCTTTCGCTCTAGGACTTCTTGCCGTCAAGCCAGAACATCAACAACTCATTGTTGACAGTGGTGCCTTAACACATCTTGTTGAACTTTTAAAGAGACATAAGAATGGCTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACTCGTGTCAGGATGGAAGGTGGCATTCCACCACTTGTTCATTTGCTTGAATTTGCTGATGCAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGGACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTTTAATGTTACGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTCCATTCTTCACCTAATATAAAGAAGGAGGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCAACCTTTGATAGAGATGCTTCAGTCTCCTGATGTTCAACTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACTCTCATAACCAGGCTGGTATTGCACACAATGGTGGCTTAGTTCCATTACTCAAGCTTCTTGACTCAAAAAATGGATCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATCAGGGTAGGTGGAGTTCAGAAACTGCAGGATGGAGAATTTATTGTTCAAGCAACAAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGCCGTGTGCTGAATCATCTGTTATATCTTATGCGAGTTTCCGAAAAGGGTGTTCAAAGACGAGTTGCATTAGCTCTTGCGCATCTTTGTTCTGCAGATGATCAGAGAAATTTTTTTATTGATCACTATGGTCTTGACTTGCTCATTGGACTTCTTGGCTCGTCTGGTTCTAAGCAGCAACTTGATGGTGCTGTAGCTTTATGCAAGTTGGCCAATAAAGCCTTGACCCTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTTTATTTAGGAGAGCAGTATGTAAACAATGCTACATTATCTGACGTTACATTTTTGGTCGAAGGTAAACGATTTTATGCACATAGAATTTGTCTACTTGCATCATCAGATGCGTTTCGGGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATTGAGATTCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAGGATCTTCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTTTGTGAGTACACAATTGCACAGGATATATCCCTTGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCTATATCATTGAGGCATGCGTGCATTCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGACCTGGGCACTCACTTCTGATTCAGCGCATAACACCAGAGATCCGCAATTATTTTGTTAAAGCTCTTACAAAGGCCAACTTTCATAACAACCGACTGTAG 2121 0.4455 MELQRRQDQSLSQRKGQKRKLDEELHEERQILAAPPTAGEREALLADVAEQVSVLESTYTWNEADRAAAKRATHALADLAKNEEVVNVIVEGGAVPALVKHLQAPPLSDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVELLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQDSHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGVQRRVALALAHLCSADDQRNFFIDHYGLDLLIGLLGSSGSKQQLDGAVALCKLANKALTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHACILFILEQFDKLSARPGHSLLIQRITPEIRNYFVKALTKANFHNNRL* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2337 706 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Apr8g2337 706 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Apr8g2337 706 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Apr8g2337 706 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Apr8g2337 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Apr8g2337 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Apr8g2337 706 SUPERFAMILY POZ domain 531 633 IPR011333 -
Apr8g2337 706 SUPERFAMILY ARM repeat 64 410 IPR016024 -
Apr8g2337 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Apr8g2337 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 701 IPR044282 -
Apr8g2337 706 Gene3D - 271 513 IPR011989 -
Apr8g2337 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 701 - -
Apr8g2337 706 MobiDBLite consensus disorder prediction 1 26 - -
Apr8g2337 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Apr8g2337 706 Gene3D Potassium Channel Kv1.1; Chain A 520 665 IPR011333 -
Apr8g2337 706 Gene3D - 48 166 IPR011989 -
Apr8g2337 706 SUPERFAMILY ARM repeat 436 614 IPR016024 -
Apr8g2337 706 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Apr8g2337 706 Gene3D - 167 270 IPR011989 -
Apr8g2337 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Apr8g2337 706 CDD BTB_POZ_ARIA_plant 526 641 - -
Apr8g2337 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Apr8g2337 706 SMART BTB_4 539 636 IPR000210 GO:0005515
Apr8g2337 706 SMART arm_5 82 134 IPR000225 GO:0005515
Apr8g2337 706 SMART arm_5 269 309 IPR000225 GO:0005515
Apr8g2337 706 SMART arm_5 352 392 IPR000225 GO:0005515
Apr8g2337 706 SMART arm_5 185 225 IPR000225 GO:0005515
Apr8g2337 706 SMART arm_5 311 351 IPR000225 GO:0005515
Apr8g2337 706 SMART arm_5 467 507 IPR000225 GO:0005515
Apr8g2337 706 SMART arm_5 135 183 IPR000225 GO:0005515
Apr8g2337 706 SMART arm_5 227 267 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2337 Apr-Chr8 33772866 33781403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2337 295 409 U-box Gene Family AT3G46510 29.915 2.46e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr8g2337 BTB 2.9e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2337 - - gmx:100784348 1267.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0380 7 9862575 9870478 Apr8g2337 8 33772866 33781403 PCT