Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2317 ATGGAACCTGGCACGAGAATAGGTGGCCCTTCTGGGGTTGTGGTAAAGAATAAAAGCTCTTCGGGGTGTTTAATTGTGAGAAAAAAAGGGGATGGTCTTGGCGGTGGGGTTGTTGGTTCTTCGAGTACTCGTAGGCAGTTTGAATCGAAGAAAGTGAGGAAAAAGCGCAAGGTCGATTTGAGTGATTCGGGATCGAGCGATGAGTTACTCATGCCTCCTGCTAGAAGGCTTGGCCCTGAGACCATTCGAGTGTGTAATAATTTGACTGCTTTCGAACGGGGTATGGTTGGAGGAGGTGAAATCAGTAGGAAGAGGGAGAGAATGGAGCAAATTAGGCGTAATGGAGATGGGATGGGCGAGGAGAATGGTTTAGAGAGGAGGGAAAGGAAGCGTAATAAGTTGGATGTGTTTGATTTTGATGAATATGATGGTATGGATGTTGAAGTGATGAGAAGGAGGCATTTTGATAATAATGGGGTTGGTTTAGGAGGAGGAAGGTTTCTGGGAGTAATGCATGCTGCTAGAAGTAGCATTGATAGGGAATTTGAAACCGGTTCAAGCAGACACACTGTGGATAAGAGAAAAAACTCCTATTATGACAGAGCAAGTGGCTTGTATCTGGGTGATAGTGTTGACCATAGTAGGTTCAAGATAAACAGAGATGGAGCTCAGCGTCCACTACCCATGTTGAGAGAGAGGTTTAATTCAGATGAATCCATTAGGGTTCAGGGTAAAAATGGAGTTTTGAAAGTTATGGTTAATAAGAAGAAGGTGGGTGGGCAACTGGAACACTATGATCATCACAAACCTGTGGAAAGTAGACAAAGCTTGAGGGCTGAGGGCTCTGCCAAGAGGAATGTCCTGATCCATCTTCCGTCATACACTGAAACAAAACCTGTTGAGAAACAGGCTTTACAAGTTAGGTCAGAGAAGAAACAGATAGCAAAAAGAAAATCATTGTCAAGTAAGGATAGTAGGGGTGATGAGCAGGATTCAGATAACAGTGACACATCATTAAATCTGGGAGTAAAAAATATTGAAGCTCGTAAATCATCAAAGAAAATAACCTCTGAAGATGAACAGACTCCCGTGCAAGAAAAACTCCCCAATACAAGAATGAAAGAGGGAAAAATCAAGCGTGGCAGTGGTACAGAAAAGCAAAAACTACGAGAACGAATACGGGAGATGTTGCTGAATGCAGGTTGGACCATAGACTATCGCCCTCGAAGGAATAGAGACTATCTAGATGCAGTTTACATCAACCCAGGGGGTACAGCCTATTGGTCTATCATCAAGGCTTATGATGCACTTCAAAAGCAATTGAATGATGATGATAACGAGGCCAAGCCCAAAGGGGAGAGTTCTTCTTTTGCTCCCATCTCTGATGATGTGCTCAGTCAATTGACAAGGAAAACACGAAAGAAGATGGAGAAAGATTTGAAGAAGAAGCAAAGAGATGATAGTGAGAGTGACAGTGAAAAAGAGCAGAAGATTAAAAGAACTACCAGCAAAAGACATGATATGAATGGCATTGATAGTGATAGCAACGAAGAGAAGTTAAGTTCCTTTATAAAGCAAGGAAGTAAGTCAATGAAAGCTAAAATGATTGAAAATGCTGTCACCAGTGGTATCTCCAAAAGCCAGAATGCTACTCGTCACTTAAATGATGGAACTGAAAAATCACTCCCTGGAAATGATTCTCATCTACATGGAAGAAAAAGTAGAAAACATGGGAGGTGCACTTTATTAGTTCGTAGTTCTAACAAAGGATTGAATTCAGAATCTGATGACTTTGTTCCCTACACGGGCAAACGAACAGTGCTTTCTTGGTTGGTTGACTCTGGGGTAGTACAGGTTGGCCAAAAGGTTCAGTATCGTAGAAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAAATCCTTACAGTTTCCAAGTTTGAACTTCATGCTGGAAGCAAATTACCCCAGCCATATCAAAACATATATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGGATAAACAAGAGAATTCTAAGAAAATCAGTTTCCATTCAGTAGATATTGATGGTAATGATCCAAATGATGATACGTGTGGTATATGTGGAGATGGAGGAGATTTAATCTGTTGTGATGGTTGTCCTTCAACATTTCATCAGAATTGCTTAGATATACAAATGCTTCCTCCTGGTGAATGGCATTGTCCGAACTGCACCTGTAAATTTTGTGGACTAGCCTGTGAAACTATTGACAAAGAAGATGATGCAATTGTATATACCCTGCATACATGTGATTTGTGCCAGAAAAAATATCATGACTGTTGTACCAAGGATATGGGTGCTTTTCCTACTAACTCCAATATGTTGGGGCCTTCCTTCTGTGGAAAAAGTTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGGATCAAGCATGAACTTGATGCAGGCTTTACATGGTCTCTTATTCATAGAACAGATGAGGACTCGGATGCAGCTAGTAAGGGAATTACCCAGTCCAAGCTAGCTGTTGCACTGACTGTGATGGACGAGTGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGGTCAATTTGATACATAATGTATTATATAATAGTGGGTCAAACTTCAGTCGGTTGAATTATAGTGGCTTTTATACAGCTATTTTGGAGCGAGGTGATGAAATAATTTCTGCAGCATCTATCAGATTCCATGGGACTAAGTTAGCTGAGATGCCATTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGTCGCCGACTTTTTTCTGCCATCGAATTGACTCTTTGTTCTCTGAAGGTTGAGAAATTGGTTATTCCTGCAATTTCTGAACTTGTTCATACGTGGACAAAAGTTTTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAACAAGGTCATTGAATATGTTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGTTAGTGGAGCAAGGAAGACTTGAGGGTGCTGAGAAAATTGAAAATGGAGATGAGGATTTTATTAAGCCCAATACAGCGAATAGGTTAGATGTGGATGCCTCCGATTTGCAAGATCCTCATGGAAGTGAAGATGCTAGTTCAGATCCTGCCAATGAGATGAACAATGAATGTAGTGATGCTTCTCAAGAACTAAACGATCAAGGTATGGTTGGTAGGACTGTTTGCTCCAAATCTCATTCTGAGGAAAGATTATCTGATTCCATTTCAGATAATTGTGTTTCTCCTTCTAGTACTAGTCATGGAGTAATTGAAAAGAAAAATGAAATAGGGAAGACCTGCCCTGTTAATGATAAACTTTGTCTTTCCAAATGTCAGCTCGTTTCATCAAATGACATTTCTACAACTACTCTTCCAATAGATGCTCCCGATTGCCCTGGAATTCCAGTTTTGGGTCAGGAAACAGCTTGTTCTGACCCTGATTCTGCTAAAAACATGGTTGAACTTGTTTCTGACAGGAAATGTCATGCCTTGAATGATAATGCTCTTTCTTCTGAAGAGGTTGATACAAATGATACCCGTGATGAGGATCATGAAACTGGTCCTTCGGTGAATTTATCTCAAGAGAATATTTCCAAGGAGAATAAGGAAAATGTTGATATCTCTGGTTCTGTTTGTAATCATGCTGGTGATTGTTCTTTGGAAGTAAGATCTGAGTTGAATAGTGAAATTGCATGA 3756 0.4084 MEPGTRIGGPSGVVVKNKSSSGCLIVRKKGDGLGGGVVGSSSTRRQFESKKVRKKRKVDLSDSGSSDELLMPPARRLGPETIRVCNNLTAFERGMVGGGEISRKRERMEQIRRNGDGMGEENGLERRERKRNKLDVFDFDEYDGMDVEVMRRRHFDNNGVGLGGGRFLGVMHAARSSIDREFETGSSRHTVDKRKNSYYDRASGLYLGDSVDHSRFKINRDGAQRPLPMLRERFNSDESIRVQGKNGVLKVMVNKKKVGGQLEHYDHHKPVESRQSLRAEGSAKRNVLIHLPSYTETKPVEKQALQVRSEKKQIAKRKSLSSKDSRGDEQDSDNSDTSLNLGVKNIEARKSSKKITSEDEQTPVQEKLPNTRMKEGKIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNDDDNEAKPKGESSSFAPISDDVLSQLTRKTRKKMEKDLKKKQRDDSESDSEKEQKIKRTTSKRHDMNGIDSDSNEEKLSSFIKQGSKSMKAKMIENAVTSGISKSQNATRHLNDGTEKSLPGNDSHLHGRKSRKHGRCTLLVRSSNKGLNSESDDFVPYTGKRTVLSWLVDSGVVQVGQKVQYRRRKRVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWDKQENSKKISFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIQMLPPGEWHCPNCTCKFCGLACETIDKEDDAIVYTLHTCDLCQKKYHDCCTKDMGAFPTNSNMLGPSFCGKSCKELFEHLKKYLGIKHELDAGFTWSLIHRTDEDSDAASKGITQSKLAVALTVMDECFLPVVDRRSGVNLIHNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELTLCSLKVEKLVIPAISELVHTWTKVFGFTHLEESLRQETRSLNMLVFPGIDMLQKLLVEQGRLEGAEKIENGDEDFIKPNTANRLDVDASDLQDPHGSEDASSDPANEMNNECSDASQELNDQGMVGRTVCSKSHSEERLSDSISDNCVSPSSTSHGVIEKKNEIGKTCPVNDKLCLSKCQLVSSNDISTTTLPIDAPDCPGIPVLGQETACSDPDSAKNMVELVSDRKCHALNDNALSSEEVDTNDTRDEDHETGPSVNLSQENISKENKENVDISGSVCNHAGDCSLEVRSELNSEIA* 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2317 1251 MobiDBLite consensus disorder prediction 1186 1234 - -
Apr8g2317 1251 Pfam PHD-finger 713 755 IPR019787 -
Apr8g2317 1251 SUPERFAMILY FYVE/PHD zinc finger 695 754 IPR011011 -
Apr8g2317 1251 ProSiteProfiles Zinc finger PHD-type profile. 710 755 IPR019787 -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 300 387 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 443 521 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 347 361 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 1038 1066 - -
Apr8g2317 1251 SMART PHD_3 712 753 IPR001965 -
Apr8g2317 1251 PANTHER PHD FINGER FAMILY PROTEIN 1 1201 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 467 514 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 25 74 - -
Apr8g2317 1251 CDD PHD2_CHD_II 713 752 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 1209 1228 - -
Apr8g2317 1251 Pfam Tify domain binding domain 635 685 IPR032308 -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 545 579 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 370 387 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 303 333 - -
Apr8g2317 1251 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1201 - -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 545 562 - -
Apr8g2317 1251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 800 IPR013083 -
Apr8g2317 1251 ProSitePatterns Zinc finger PHD-type signature. 713 752 IPR019786 -
Apr8g2317 1251 MobiDBLite consensus disorder prediction 1193 1208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2317 Apr-Chr8 33571167 33579063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2317 4 1046 PHD Transcription Factor Family AT4G14920 48.970 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr8g2317 TDBD 9.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2317 - - mtr:MTR_1g103830 1784.62