Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2297 ATGTTCTCATCCACATATGACTCCAACCTTTTCCCTACCTTTCCATCTTCTTCTTACCCTACCCTTCCTTTTCTCATTGATCCTGAAAATGATTTTGCAAGTAGCACCCTTCTTGATGACCCACTTGTTGTTCCCTACATACCCACTACACATGATCCTCCATTTCCTGAAGAAACTGTTGCTAATTTGGCAGTTGCTGACTGCACTGCCATGCTTGAACATGATGCAAACACAAACTATGCTTCCCACTATGGTAGCATTTCCAATTTTCTAACCCAGAAACCAGCCATAGCCAAGAAAGATAGGCACAGTAAGATTCACACGTCTCAGGGGTTAAGGGACCGTAGGGTGAGACTCTCTAGTGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACCCTTGAGTGGCTCTTCACAAAGTCAGAGAATGCAATCAAAGAGCTAGCTAGAAGTAAGCATAGCTACAGTAGTAGTGGGGGTGACAAGTATTCCTGTGACCCTTCTGTGGATTCAAATAACAACAGATCATTGGTGAGTGGTGCTGATCATGGTTCTAAAGGGAGGAAGTTGAAATGGACACAGAGGGATGAAGCTGGTGTTCAGACCAAAAAGGAGTCAAGAGAAAGGGCAAGAGCAAGAGCAAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTGGAAGGGTGCAGCAAGAGTTTGATGAAAGGTGCCCTGTAACTTCAACAAATGCTCAAATGCTGCACCAATTCAGGTCATCTATTCAACCTGAACCCGAGGCTTGTGCAAGATGGGTTCAACCTTATAACCCTTATCTCATAGACAGTGAAGCAGCAATAGATGGCTTCAACGTCATTGAAGAATCTATTATGATTAAAAGAAACATGAGGTCATCATCATTGATGGCTTCTAATCACCAAAACGTTGTGATCCCTAGGGATGCAAGTTTCAACAGTAACGACTTCCATCTATTACCCTATTCCACTTCCAACTGGGATACTAATGGGGCCGTTAATGGACGCTCAAACTTTAGTGGAATAGCCACAATGAATCTATCCACATGTTTCATGAACCAGTGGTAA 1104 0.4303 MFSSTYDSNLFPTFPSSSYPTLPFLIDPENDFASSTLLDDPLVVPYIPTTHDPPFPEETVANLAVADCTAMLEHDANTNYASHYGSISNFLTQKPAIAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSYSSSGGDKYSCDPSVDSNNNRSLVSGADHGSKGRKLKWTQRDEAGVQTKKESRERARARARERTCYKMCSSGRVQQEFDERCPVTSTNAQMLHQFRSSIQPEPEACARWVQPYNPYLIDSEAAIDGFNVIEESIMIKRNMRSSSLMASNHQNVVIPRDASFNSNDFHLLPYSTSNWDTNGAVNGRSNFSGIATMNLSTCFMNQW* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2297 367 ProSiteProfiles R domain profile. 213 230 IPR017888 -
Apr8g2297 367 MobiDBLite consensus disorder prediction 159 189 - -
Apr8g2297 367 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 362 - -
Apr8g2297 367 Pfam TCP family transcription factor 98 233 IPR017887 -
Apr8g2297 367 MobiDBLite consensus disorder prediction 191 219 - -
Apr8g2297 367 MobiDBLite consensus disorder prediction 159 219 - -
Apr8g2297 367 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 362 IPR005333 GO:0003700
Apr8g2297 367 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2297 Apr-Chr8 33389796 33390899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2297 97 232 TCP Transcription Factor Family AT1G67260 44.737 7.27e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr8g2297 TCP 5.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2297 - - aprc:113871835 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2297 8 33389796 33390899 Apr6g0792 6 12383382 12384849 PCT