Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2294 ATGGAAACGCCAGAAAGGAACAAGATCAATGCTGATACTTCCCAACCTGAGGATTCTCCAGTATTTAACTATATGAATACTCTATCTCCTGTAAAGCCCATTAAGTCTGTTTATTTTACTCAGCCATTCAACTCACTCAGCTTTCCGTCCCCTCCACCGGTTTTCACCTCACCCCATGCCAACTGTCCCACGGAATCCGGATTCCTTAGGAGGCATGACCTTTTGGACACATCCACACTTAATGTTTCGTCTGAAGATGTAAATATTATCTCTTTACGTGATGAGGTTGTTGCAGTTTCAACTCATGCATGTTATGACACAGTTGAGATGCAGGAAAATACTGATCAACAGATTTCCGTTGGAGATGGCTTAATTGAGCCATCTAATGGAAACCCAGAATTCTTACTCAAGCTTCCACAAGCCTTAAAATATAATTCTGGGACCACTGGGTATGATCCTCTACTTTGTAGTGATGAGGCTAACTCTGTGTTGGAATTACCTCGCAAGCCAGCACCAGATTTTGCTTATGTTTCAGAAGGCTCTGAAAAAGATTCGGTTAAGGAGGAAATCCATATTCCAAGCATATGCCACAGTGAGGCAAAAAAGAAAGGCCCAGATTGTGATTGCGAAAGTTTTGTGACTGGAACCTCTAATCTGTTAATGTTTGGTTCTTCGATACATTTTAGCAATATAACGAATTTGTTACAAAAACCTTCCACCAATCGTGGTCATGGAAAGCACATTATTAATCCAATTGCTTCTGGTTCAGAACATGAAACTGAAGGCTGTTCTTCTAAATCAATAGCAGCCTCAGATACATCTCAGGAACAGGACAATCTTGCCAATGATGCTTTGATGACTAGCAATTCAAGTGAGAAAACGGGTGAAAACCAATTCACATGTGCAAGCCAATTCGTTTTGCTGCTCTCTGCAAGCCAAGAACAGAAACTATCAACGGTACCTGCTTCAGTGGAAAGAGATTTGGAGTCATCAAAGAATGTCATTCAGCCTGCTGAAGATTTTATCCCATCAGTAGTTCACATGGCTGATGAAGATTTCCAGCAGAATAACCAAAAAAAGAAAAGGCGCAAGTTGGAACCAGCTGGGGAAATGAAGTCTTGCAAGGGGTGTTCTTGCAAGAAATCGAAGTGTTTGAAGCTTTACTGTGCGTGCTTTTCTCATGGTGTCTTCTGCACAGAATCTTGTTCATGTAAAGACTGCATTAACAAGCCTATTAACGCTGATATTGTTGCTCAAACTCGCGAGCAGATTAAGTCTCGAGACGCACCTGCATTTTCTCCTAAAATTTCAAGAAATTCAGACTCGGTACCTGAAATCGGGGGTGACCCTCACAAAACTACAGTTTCAGCACGACACAAAAAAGGATGTAATTGCAAGAAATCAAGATGCCAACAGAAATATTGTGAATGTTTTCAGGGAAATGTTGGTTGCTCCTCAAAGTGTAGATGTGAAGGGTGCAAGAACTTATATGGTAGAAGAGTTTCTTCTCCTGGAAAAGCTGAGCCTGATGAAGAAACAGAAGCATGTGAAAAGGGTTTAGTGAAAAAAGCTTCACAGAAAACTGGAATTAGGAATATTGATGACCATCCAGATAGTGTTTTTACTACAACACCGTCAGGGCTTTCCAGACCTCCCTTTCCATCAGAGGGTATGCAACCAAGATCTGTTGCTACCATGACAGCTTCAGGATTTGTTGGCAGCCAAATGCTTGGGATATCAGATGTTCCACAGTCTCAACCTAAGTTTGAAAATTCTAGTCAAACTGATCCAGAGGATGAGTCTGCTCTCACTTGCATCAAAATTTCTTCTTCAAATGCCAAGAGGATCTCCTCTCAAAATGGTGACTTTGAATCATCTCCTACTTGCAGCTGTGGGAGGAAGTTGACATTTCCAAGCGGCCCTCCATTTTCTTTTCTTGCCCCTCCCCGTTAG 1953 0.4168 METPERNKINADTSQPEDSPVFNYMNTLSPVKPIKSVYFTQPFNSLSFPSPPPVFTSPHANCPTESGFLRRHDLLDTSTLNVSSEDVNIISLRDEVVAVSTHACYDTVEMQENTDQQISVGDGLIEPSNGNPEFLLKLPQALKYNSGTTGYDPLLCSDEANSVLELPRKPAPDFAYVSEGSEKDSVKEEIHIPSICHSEAKKKGPDCDCESFVTGTSNLLMFGSSIHFSNITNLLQKPSTNRGHGKHIINPIASGSEHETEGCSSKSIAASDTSQEQDNLANDALMTSNSSEKTGENQFTCASQFVLLLSASQEQKLSTVPASVERDLESSKNVIQPAEDFIPSVVHMADEDFQQNNQKKKRRKLEPAGEMKSCKGCSCKKSKCLKLYCACFSHGVFCTESCSCKDCINKPINADIVAQTREQIKSRDAPAFSPKISRNSDSVPEIGGDPHKTTVSARHKKGCNCKKSRCQQKYCECFQGNVGCSSKCRCEGCKNLYGRRVSSPGKAEPDEETEACEKGLVKKASQKTGIRNIDDHPDSVFTTTPSGLSRPPFPSEGMQPRSVATMTASGFVGSQMLGISDVPQSQPKFENSSQTDPEDESALTCIKISSSNAKRISSQNGDFESSPTCSCGRKLTFPSGPPFSFLAPPR* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2294 650 SMART CXC_2 372 413 IPR033467 -
Apr8g2294 650 SMART CXC_2 458 499 IPR033467 -
Apr8g2294 650 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 296 - -
Apr8g2294 650 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 310 648 - -
Apr8g2294 650 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 310 648 IPR044522 GO:0003700
Apr8g2294 650 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 296 IPR044522 GO:0003700
Apr8g2294 650 MobiDBLite consensus disorder prediction 580 601 - -
Apr8g2294 650 ProSiteProfiles CRC domain profile. 373 498 IPR005172 -
Apr8g2294 650 MobiDBLite consensus disorder prediction 425 453 - -
Apr8g2294 650 MobiDBLite consensus disorder prediction 526 560 - -
Apr8g2294 650 MobiDBLite consensus disorder prediction 254 276 - -
Apr8g2294 650 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 375 410 IPR005172 -
Apr8g2294 650 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 460 495 IPR005172 -
Apr8g2294 650 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2294 Apr-Chr8 33327610 33331299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2294 17 648 CPP Transcription Factor Family AT4G14770 33.570 2.81e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Apr8g2294 TCR 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2294 - - aprc:113871832 1281.54