Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2288 ATGGCTGGTAGGTTACCTGGTGTTGGGTTGCTTCCAAGGAAGAGAACAGAGCAACCCCATAGATATGAACACCATGCCACCTACCGTCACTCCCACCCGAGGGACGAATCATCATTGGAGCCACCATGGCTTTCAATTAGTGTCTTAGATGATACTGCCCTCAAGGCCAGGCAACGTTTGCAGAAGAAGCTTGGACACTTCTTTTCCTCTTCCAGGTCAAGTGAGAAATCAAAAAAAGAAGGAAAAGAAAGCCAAAGCAACAAGCAGCGGCAGAAGGATGTAGGATTGGGTAGGAAGTTATTAGAAAGTTCATGGTTATTGCGTCCAAACAAGTTTAAGAAAGAGAGAAAAGTGTGTGCTGTTTGCCTAGAAGATTGCCAGCAACAGCAGCAAGTTATGAACCTTTCTTGCTCTCATAAATACCATTCAGCATGTCTTCTTCCCTGGCTTGCAACACATCCCCATTGTCCTTATTGTCGAACCCCAGTTGAGCCTTCATGA 501 0.4551 MAGRLPGVGLLPRKRTEQPHRYEHHATYRHSHPRDESSLEPPWLSISVLDDTALKARQRLQKKLGHFFSSSRSSEKSKKEGKESQSNKQRQKDVGLGRKLLESSWLLRPNKFKKERKVCAVCLEDCQQQQQVMNLSCSHKYHSACLLPWLATHPHCPYCRTPVEPS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2288 166 MobiDBLite consensus disorder prediction 1 40 - -
Apr8g2288 166 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Apr8g2288 166 CDD RING-H2_PA-TM-RING 118 160 - -
Apr8g2288 166 Pfam Ring finger domain 118 160 IPR001841 -
Apr8g2288 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 166 IPR013083 -
Apr8g2288 166 MobiDBLite consensus disorder prediction 72 96 - -
Apr8g2288 166 MobiDBLite consensus disorder prediction 14 37 - -
Apr8g2288 166 SUPERFAMILY RING/U-box 118 165 - -
Apr8g2288 166 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 22 162 - -
Apr8g2288 166 MobiDBLite consensus disorder prediction 65 96 - -
Apr8g2288 166 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 22 162 - -
Apr8g2288 166 SMART ring_2 119 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2288 Apr-Chr8 33284651 33286072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2288 113 160 C3H Transcription Factor Family AT3G58720 43.750 1.95e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2288 - - gmx:100527548 257.684