Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2280 ATGAATCCTAATGGTAGAGTGAAGGAAGAGTTTCTTGGAGAAACTTCAAGCTTTTGTTGTAGTGGTTATGAACAGCAAGCAGTGGTTGTTCCTCAACCAATTGATGGGCTTCATGAAACTGGTCCTCCACCATTCCTCACAAAAACATATGACATCGTTGATGACCCTTCAACGAATCATATAATTTCGTGGAGCTCAGGGAACAATAGTTTTGTTGTGTGGGATCCTCAGGCCTTCTCCATAACCCTACTTCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTCAACACTTATGGGTTTAAAAAGGTGGATCCAGATAAGTGGGAGTTTGCTAATGAGATGTTTCTTAGAGGACAAAGAATTCTATTGAAGAACATTAGAAGGAGAAAAGCAAATCAATCTCAGGCAATGATGCAGCAAGGTATAGAGGCTTGTGTTGAGGTGGGGCAGTTTGGATTAGATGGAGAAGTTGATCAGTTGAGGCGTGACAGGCAAGTTCTCATGGTGGAGTTGGTGAAACTTAGACAACAGCAACAGAATACCAGAGCTCACCTTAAAGAAATGGAAGGCAGGCTCAAAAGGACCGAGCAGAAACAACAACAGATGATGAATTTCTTGGCAAGAGCAATGCAGAATCCCAACTTTGTACAACAGTTGGTTCAGCAAAAGGAGTGGAGAAAGGAACTTGAGGAAGCCTTTTCCAAGAAGAGGAGGAGACCTATTGATCAAGGGCCTAGTAATGTTGTTGAAGTAGATGCATTAGGTTGTGCTGAAGAATGCTCAACTTTTGTTAAACTTGAACACCAGGAAAACAATGATGACAAGTTATTGGAGTTTGAGGTGTCTGAGATGGACCTTGCTTTGAATATGGAGGGACCAAGTGGAAGCCAGAAGAACATGGAGGAAGATTTAGATCACATTCAAACTGAAATTAGAGATGGTAGAGATATTGATGATGTGTTTTGGCAAGATTTGCTTAATGAGGGTATTGTAGATCAAGATGCACTAGGTGTTGAAGATGTAGATGTATTGGCTGAGCAACTTGGTTATTTGGCCTCTACTCCTAAATAG 1086 0.4144 MNPNGRVKEEFLGETSSFCCSGYEQQAVVVPQPIDGLHETGPPPFLTKTYDIVDDPSTNHIISWSSGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQRILLKNIRRRKANQSQAMMQQGIEACVEVGQFGLDGEVDQLRRDRQVLMVELVKLRQQQQNTRAHLKEMEGRLKRTEQKQQQMMNFLARAMQNPNFVQQLVQQKEWRKELEEAFSKKRRRPIDQGPSNVVEVDALGCAEECSTFVKLEHQENNDDKLLEFEVSEMDLALNMEGPSGSQKNMEEDLDHIQTEIRDGRDIDDVFWQDLLNEGIVDQDALGVEDVDVLAEQLGYLASTPK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2280 361 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 9 341 - -
Apr8g2280 361 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2280 361 Gene3D - 37 135 IPR036388 -
Apr8g2280 361 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Apr8g2280 361 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2280 361 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2280 361 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2280 361 Coils Coil 162 203 - -
Apr8g2280 361 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2280 361 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2280 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 341 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2280 Apr-Chr8 33212874 33214836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2280 27 359 HSF AT3G22830 55.616 2.65e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr8g2280 HSF_DNA-bind 2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2280 K09419 - gmx:100809515 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0453 7 10798632 10802400 Apr8g2280 8 33212874 33214836 PCT