Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2275 ATGGAGTGCTTCGAGTGCCTCCAACTTCGAGTAAAGTCAGATTTCTCTGACCAAGTCTTTTTCAATTATGGCATCTCCGCTTCTGCTTTTCCCTTCGGATCCTCAGCTATCGTCCATATTTCTGGTACAGCAGATGGTGAAGCTTCGGGTGGTCAATTTGTATTACAATACATGCCGAGTCATGAGAAGAATTGTTTTACCAATTATGTAAATGAGTATATTTTGGATAGTAGCGAAAGTACATTGAGTAGTGATCCTGATATTGGAGGCAGTCAGCATAATAATGTGGTTGATGGTGGAATTACTTCATTAGATGATTTGGAAAACGGAAAAGCTTCTTTGAAAAACACAACTTGTAATCATTCTGGAAGGTTTTCTTGCTTGAGGACAATGAGTTCACTTGCCCCAATTGCTCGTGTGGGAATGTCTTCCTATTCTACATTTCAAGAGGTTTCCACTGATTTCTTGTCTGGGTTGATCGAAGATCATGTGCTAGATTCGCTTGATCTCTTCATTGAAGGGAAAGCATCTGGACGGGACAGTATAAATTTCCTCAGTTTACTTGGGTTGCCATCGTTTGAGGAGAATACTTTTCCTGGCTCCTTGAGGCATCCAAACATAGCTCCTGTCCTTGCAATTTTTAAAACATCTGATCATGTCAACATGGTACTTCCAAAGACGCCGTACAACTTGGAAAGTATTCTTCATTTTAACCCCAATGCCTTAAAGTCTGATTGGAATAGAAGATTTCTTATATATCAGCTACTGTCAGCCTTATTGTACTTACATGGTTTAGGGATTTCCCATGGTAATATATGCCCATCCAATATCATGTTGACGGATTCATTGTGGTCTTGGCTGAGATTATGGAATGAGCCTGTATCGGAATGTAATTTAACTTTGCAGAAGAGTGAAAGCATTAGTTCTAAACCTGCAAGAATTGGTTGTTGTAATGGTGGTTGTCATTCTGATGGCCTTTATGCTGATCTAAAGCTTTCTCCAACAATAGATTGGCATTCTAGCTTTCACCAGTGGTGGAGAGGAGAACTAAGTAATTTTGAATATTTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGGGACCATACATTTCATCCTGTAATGCCTTGGGTAATTGATTTTAGCTCAAAACCCGATGATAATTGTGATGTAGGCTGGCGAGATTTGAGCAAGAGCAAATGGCGCTTGGCAAAAGGTGATGAACAATTGGATTTCACCTATTCAACGTCTGAAATCCCTCATCATGTGTCAGATGAATGTCTATCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGGTTGCCTTTGAGTGTTCTCCGAATGGCTGTTCGTTCAGTGTATGAACCTAATGAATATCCTTCTACAATGCAGAGGCTTTATCAATGGACCCCTGATGAATGCATTCCAGAGTTTTATTGTGATGCCCAAATTTTTGAGTCAATAAATTATGGAATGGCTGACTTGGCTGTGCCTTCTTGGGCAGAGAGTCCTGAGGATTTCATTAAATTGCATCGTGATGCGTTAGAAAGTAATAGGGTGTCATTTCAACTCCATCATTGGATCGATATAACCTTTGGGTACAAAATGTCTGGCCAGGCAGCTATTGCTGCTAAGAATGTTATGCTTCCTCTTTCAGAACCCCTGATGCCAAGATCAGCAGGGCGTCGTCAGCTCTTTACACAACCACACCCCATCCGTCATGCCACTACCAGAGTAACACATCATGGTTACAATAAATATGCCAAAGTTTGGAGTCAAGCAAATGAAATGCAGCCAGAGACGTCTCTTCTATCTGAAACTGCTTATCTACAAGAACTAGAGCAAGCATCTACATTTTCTGAACATGCTAGGCATTTGAATGCTTGTTACCATTATCCCTTAAATCAAGTGAAAGGGAAGAACATCTCATCTTCGGGAGTTCCAACAACACAGAAATTTAGTAGAAGTATGCACAAACTATCCTTGATTGACAGAAATTACTGGGTTCCATGTAAAATAAATCTAATTTCTTTTCTTCAACATATGAAAGAGGAAGATGAAAGCTCCTCAGGATATCCAAACTTGCTGCTTTGGAAGCAGAAATTATCTTCTTCGAAACTTTGCTCAGAAGATGCTGCTAAGGACATATTTTCTGTTGGTTGTCTTTTAGCTGAGCTTCATCTTTGCAGGCCACTTTTTGATTCAATCTCATTAGCATTATACTTGGAAGATGGAACGGTGCCAGGATTTCTGCAGGAACTACCTCCTGATGTTAGATTACTTGTTGAAGCATGTATCCAAAAGGATTGGATGAGGAGGCCATCTCCCAAAATTCTTCTGGAATCACCTTATTTCCCTAAGACTGTCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCATCTTGTAGCTAAAGATGAAACTCGCCTTCGTTATGCTGCAAATATTGCAAAGGAGGGTGCTCTCAGGGAAATGGGTGCATTTGCAACTGAAATGTGCGCTACTTATTGCTTACCACTTATAGTAAATGCTGTGAGCGACAGTGAAACTGAATGGGCATATATACTACTGAAGGAATTCATAAAATGCTTAACAGCGCAAGCAGTAAAAACATTAATCTTGCCAACCATACAGAAAATTTTACAGACGACAGGTTATTTACATTTGAAGGTTTCCCTTCTACAAGATTCATTTGTCCGTGAAATATGGAATCGAGTCGGTAAACAAGCATACCTGGAAACTATTCACCCATTAGTCTTGTCAAACCTATATATTTCTCCAGATAAAAGTTCAGCTGCCTCTGCTTCAGTGCTTCTAATTGGTTCTAGTGAGGAGATTGGTGTACCTATTACCATACATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAAGGACTATGTGCAGATGGCATTGACGTGCTGGTCAGAATTGGTGGCATTTTTGGGGAATCTTTTATTGTCAAACAGATGGTTCCATTACTTAAAAATGTGGTTCGTTCCTTTATTGATGTGTCATACATGAATAAGCCTGATCCTGTCCAGAGTTGGAGTGCTTTAGCACTTGTTGATTGCATGATGACTTTAGATGGCCTTGTAGCTTTCTTGACAGAAGAGACCATTGTAAAGGAACTGCTTGAAGACCTAAGTTGCATATACGTTGGGGTTCTTATGCAGAAACATATGGAAATTGCAGTGCTTCAGGTTGCTGCTACTACTCTCTTTGGAATTTGTCAACGGATTGGGGCAGATTTGACAGCATTGCATATTCTTCCAAAACTTAGAGAACTATTTGACGAGCTTGCTTTCTCCCAGGAAATTTCTAAGGGTTCAACTACTGTTGGCAGAAACTTGAAGGTTAACAAATTAAAAATTGGAGGGGACTTGCAAATTGAAACTCGTATGGATCTAGTATTGGTTCTCTATCCTTCCTTTGCATCTCTTCTTGGAATAGAGAAACTTCGTCAATGTTGTGCTACATGGTTGCTTCTTGAACAATATCTTCTACGCAGTCATAATTGGAAGTGGGAACATGCAGGAGAATCATCAAAAAATGGCTCAGAAAATATTATTGCTAGAAGACCTTTTATAGCCCAGGGATTTACATCTGAATACAATCCAGCAAAGCTGTTACTTAATGGAGTTGGATGGTCGATTCCACAATCCCAAGGAAGTAGAAGTGCCAAAAATTTGATCCCACAGAGACGATCATTTAAGGCTCATCAACGTCCATTAGTAATGCACGAAGGAATGTCACACCAAATGAACCATGAACCCTGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGACCTGAATTTCTTGGGAGGGTTGGGGTTCAGAAAGATGAGCTTCCATGGAAAATCAGAGCATCTGTTTTATACTCTATACGTGCACACCATGGAGCAGTGAGGTCTCTGGCTGTTCATCAAGATGAATGTACTGTTTTTACCGCAGGAATTGGCCAAGGATATAAAGGAACTGTTCAGAAATGGGAATTGAGCCGAACTAACTGTCTGTCTGGCTATTATGGCCATGAGGAGGTTGTGAATGATATTTGCATCTTACCATCTAGTGGAAGAGTGGCATCTTGTGACGGAACAATTCACATTTGGGATAGCCAAACAGGGAAGCAAATATCAGTATTTGCTGAGTCCCAAACAGAATCTGGCCATCCTACAAGCCACCCATCATCTGCGCCAAAAATTAACAGTGACCAGGCTAATGTGCTTAATTTGAACACACTGTCAAATGGAATATTGTCTAGTGCTTTTGATTCAAGCCTTTATACTTGTATGCATCGATTATACTCCACTGAAACTCTTATAGTTGGCACTGGAAATGGTTCTCTAAGGTTCATTGATGTTGCTCAAGGTCAAAAGCTTCATATTTGGAGAGGGGAATCTAATGAATCTAGTTTTCCTTCACTTATTTCTGCTATTTGTTCAGCTGGTTCTGACAAGATGCAGGGAGGAGGAATTTCTACTTTGCCATCTTTAATTGCAACTGGACTAAGTTCTGGTCACTGTAAATTATTTGATGCAAAGAGTGGAAATGTCATCGCCTCTTGGCGAGCTCATGATGGATATGTGACAAAGTTGGCAGCACCTGAGGAGCATCTTCTTGTTTCCAGCTCTCTGGACAGAACTTTGCGAGTTTGGGACTTAAGAATGAATTTGCCATCACGGCCCAGTATTTTCAGAGGTCATTCAGATGGTATATCCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGAATTGGACTTCTCTCCTTGTCTAAATCTGCCTATGAAACAGATGGGCAGCAGCACATTATCCCCCAGAAACTCTACGTTTCTGATAATGGATTGAGAAGCTTGTCAGCATTATCAAGTATTAGCATACTTCCATTCTCTCGATTGTTTCTCATTGGAACAGAAGATGGTTATCTGAGAATCTGTTGTTGA 4965 0.4048 MECFECLQLRVKSDFSDQVFFNYGISASAFPFGSSAIVHISGTADGEASGGQFVLQYMPSHEKNCFTNYVNEYILDSSESTLSSDPDIGGSQHNNVVDGGITSLDDLENGKASLKNTTCNHSGRFSCLRTMSSLAPIARVGMSSYSTFQEVSTDFLSGLIEDHVLDSLDLFIEGKASGRDSINFLSLLGLPSFEENTFPGSLRHPNIAPVLAIFKTSDHVNMVLPKTPYNLESILHFNPNALKSDWNRRFLIYQLLSALLYLHGLGISHGNICPSNIMLTDSLWSWLRLWNEPVSECNLTLQKSESISSKPARIGCCNGGCHSDGLYADLKLSPTIDWHSSFHQWWRGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDNCDVGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDAQIFESINYGMADLAVPSWAESPEDFIKLHRDALESNRVSFQLHHWIDITFGYKMSGQAAIAAKNVMLPLSEPLMPRSAGRRQLFTQPHPIRHATTRVTHHGYNKYAKVWSQANEMQPETSLLSETAYLQELEQASTFSEHARHLNACYHYPLNQVKGKNISSSGVPTTQKFSRSMHKLSLIDRNYWVPCKINLISFLQHMKEEDESSSGYPNLLLWKQKLSSSKLCSEDAAKDIFSVGCLLAELHLCRPLFDSISLALYLEDGTVPGFLQELPPDVRLLVEACIQKDWMRRPSPKILLESPYFPKTVKSSYLFLAPLHLVAKDETRLRYAANIAKEGALREMGAFATEMCATYCLPLIVNAVSDSETEWAYILLKEFIKCLTAQAVKTLILPTIQKILQTTGYLHLKVSLLQDSFVREIWNRVGKQAYLETIHPLVLSNLYISPDKSSAASASVLLIGSSEEIGVPITIHQTILPLVHCFGKGLCADGIDVLVRIGGIFGESFIVKQMVPLLKNVVRSFIDVSYMNKPDPVQSWSALALVDCMMTLDGLVAFLTEETIVKELLEDLSCIYVGVLMQKHMEIAVLQVAATTLFGICQRIGADLTALHILPKLRELFDELAFSQEISKGSTTVGRNLKVNKLKIGGDLQIETRMDLVLVLYPSFASLLGIEKLRQCCATWLLLEQYLLRSHNWKWEHAGESSKNGSENIIARRPFIAQGFTSEYNPAKLLLNGVGWSIPQSQGSRSAKNLIPQRRSFKAHQRPLVMHEGMSHQMNHEPWFWFPSPATIWDGPEFLGRVGVQKDELPWKIRASVLYSIRAHHGAVRSLAVHQDECTVFTAGIGQGYKGTVQKWELSRTNCLSGYYGHEEVVNDICILPSSGRVASCDGTIHIWDSQTGKQISVFAESQTESGHPTSHPSSAPKINSDQANVLNLNTLSNGILSSAFDSSLYTCMHRLYSTETLIVGTGNGSLRFIDVAQGQKLHIWRGESNESSFPSLISAICSAGSDKMQGGGISTLPSLIATGLSSGHCKLFDAKSGNVIASWRAHDGYVTKLAAPEEHLLVSSSLDRTLRVWDLRMNLPSRPSIFRGHSDGISSFSIWGQDVISISRNRIGLLSLSKSAYETDGQQHIIPQKLYVSDNGLRSLSALSSISILPFSRLFLIGTEDGYLRICC* 1655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2275 1654 Gene3D Transferase(Phosphotransferase) domain 1 676 791 - -
Apr8g2275 1654 SMART WD40_4 1459 1515 IPR001680 GO:0005515
Apr8g2275 1654 SMART WD40_4 1518 1556 IPR001680 GO:0005515
Apr8g2275 1654 SMART WD40_4 1407 1456 IPR001680 GO:0005515
Apr8g2275 1654 SMART WD40_4 1337 1374 IPR001680 GO:0005515
Apr8g2275 1654 SMART WD40_4 1619 1654 IPR001680 GO:0005515
Apr8g2275 1654 SMART WD40_4 1291 1334 IPR001680 GO:0005515
Apr8g2275 1654 CDD PKc 201 282 - -
Apr8g2275 1654 CDD Beach 344 574 IPR000409 -
Apr8g2275 1654 ProSitePatterns Trp-Asp (WD) repeats signature. 1543 1557 IPR019775 -
Apr8g2275 1654 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1525 1558 - -
Apr8g2275 1654 Pfam Protein kinase domain 194 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2275 1654 SUPERFAMILY BEACH domain 332 574 IPR036372 -
Apr8g2275 1654 ProSiteProfiles Trp-Asp (WD) repeats profile. 1344 1383 IPR001680 GO:0005515
Apr8g2275 1654 SMART Beach_2 342 574 IPR000409 -
Apr8g2275 1654 SUPERFAMILY WD40 repeat-like 1294 1652 IPR036322 GO:0005515
Apr8g2275 1654 ProSiteProfiles Protein kinase domain profile. 134 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2275 1654 SUPERFAMILY Protein kinase-like (PK-like) 200 284 IPR011009 -
Apr8g2275 1654 Gene3D Transferase(Phosphotransferase) domain 1 194 299 - -
Apr8g2275 1654 Gene3D - 1492 1654 IPR015943 GO:0005515
Apr8g2275 1654 Gene3D - 1287 1491 IPR015943 GO:0005515
Apr8g2275 1654 SUPERFAMILY Protein kinase-like (PK-like) 712 806 IPR011009 -
Apr8g2275 1654 Pfam Beige/BEACH domain 344 553 IPR000409 -
Apr8g2275 1654 ProSiteProfiles BEACH domain profile. 330 599 IPR000409 -
Apr8g2275 1654 Pfam WD domain, G-beta repeat 1339 1374 IPR001680 GO:0005515
Apr8g2275 1654 Pfam WD domain, G-beta repeat 1520 1556 IPR001680 GO:0005515
Apr8g2275 1654 Gene3D BEACH domain 335 574 IPR036372 -
Apr8g2275 1654 PANTHER GH12955P 2 1654 - -
Apr8g2275 1654 ProSiteProfiles Trp-Asp (WD) repeats profile. 1525 1558 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2275 Apr-Chr8 33174735 33184480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2275 1291 1557 Miscellaneous Gene Families AT5G08390 22.711 3.64e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Apr8g2275 Beach 1.3e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2275 K17601 - gmx:100809116 2959.47