Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2262 ATGCCTTCTCTTCCTCTCTCTGACGCTGAAGCCACTCCCAAAGATATTACTAATAAGAAACACAAAGCCAAGAAAACCAAAAACCAATCCATAACCGAACCCATACTCCATTCCAACCCCGAAGATGGGGTTTCGGGGAAGAAGAAGAAGACGAAGAAGCGCAAGGCTTCAGACTTAGAGGCCATGACGATCGACGAGACTAGTTCCGACCTGGACGAGAATAACAATAAGATGAAGAAAAAGAAGAAAAAATCCAAGTCGGAGGAACCTTCATTAATGCAACAGGAACAAGAACTAGAACGAGAAAAGAGGAAGGACGATCCCAATGCGGTTTCCAAATTCAGGATTTCGGTGTCGTTGAGGGAAAAGTTGAAGGCAAAGGGAATCGAATCGCTCTTTCCCATTCAAGCCATGACTTTCGATACCATTCTCGATGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCCTTCGTGTTACCCATATTAGAGTCTTTAACGAATGGTCCTGCAAAAGCGTCCAGAAAGATCGGCTATGGGAGGCCTCCGAGCGTTCTTGTGCTTCTACCTACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGCGGTGCAATGGGGTTGACTTCTTGTTGTTTATATGGTGGAGCTCCGTATCAAAGTCAAGAAATTAAGCTAAAGAGAGGTGTTGATATTGTTATTGGCACACCAGGTCGAGTAAAGGATCATATAGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAATTGATTCTAGGTAAGGTAGAAAATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCAGGAAAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCTTGTACAAGTGCTGCCAGGTCCCAGCTTATCCCGGACATTATTCGCTGTTATAGCAGTGGAGGCAGGACTATTATATTTACCGAGACAAAGGAGTCAGCTTCTCAGCTTGCAGGGATGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAACAGGCACAACGTGAGGTTACTTTGTCTGGCTTTAGGTCTGGGAAATTCATGGCATTGGTTGCCACAAATGTGGCAGCTCGTGGGCTGGATATTAATGACGTTCAGTTAATTATCCAGTGTGAACCCCCAAGGGATGTAGAAGCCTATATCCATCGTTCTGGCCGCACAGGGAGAGCAGGTAATACTGGGGTTGCTGTTATGCTTTATGATCCAAAAAGATCAAATATATCTAAAATAGAAAGAGAATCTGGCGTGAAATTTGAACATATATCTGCCCCCCAGCCTGATGATATTGCCAAAGCTGTTGGTGGTGAAGCTGCTGAAATGATTACTCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGCCTGCTGCTGAGGAGCTTTTAAACAGTTCTGGTTTATCAGTTGTTGAATTGCTTGCAAAGGCTCTTGCCAAGGCCGTTGGTTATACTGAAATAAAGAAAAGATCCCTTCTCACTTCCATGGAGAACTATGTTACATTACTTCTTGAGATTGGAAGACCAATATTTACCCCATCTTTTGCGTACGGAGTCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCAGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAGATACATATCTTACTGGTCAGGAAAATGCCTCGAATGTGAGTTTAGAGGTGTTGAAAACATTGCCACGTTTGCAACAGAGAGATCAATCAAGAGGTGGTAGATTTGGTGATGGCGGTGGTCGAAGTGGGTTTGGTGATAGAAGTGGGGGAAACAGGTTTTCAGGGGGAAGAGGTGGGGGTGGCGGCGGCAGAAATGGTAGATTTTCAAACGATAGATTTTCCAATGGTGGTGGGAGAGGTCGTAGCAACTGGGGTGGAAAGAGATGGTGA 2109 0.4429 MPSLPLSDAEATPKDITNKKHKAKKTKNQSITEPILHSNPEDGVSGKKKKTKKRKASDLEAMTIDETSSDLDENNNKMKKKKKKSKSEEPSLMQQEQELEREKRKDDPNAVSKFRISVSLREKLKAKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKIGYGRPPSVLVLLPTRELACQVHADFEVYGGAMGLTSCCLYGGAPYQSQEIKLKRGVDIVIGTPGRVKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVSKVQTLLFSATLPDWVKHIAGKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTSAARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGMLPGARALHGDIQQAQREVTLSGFRSGKFMALVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNISKIERESGVKFEHISAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKPAAEELLNSSGLSVVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGRPIFTPSFAYGVLRRFLPEEKVEAVKGLSLTADGNGVVFDVPAEDLDTYLTGQENASNVSLEVLKTLPRLQQRDQSRGGRFGDGGGRSGFGDRSGGNRFSGGRGGGGGGRNGRFSNDRFSNGGGRGRSNWGGKRW* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2262 702 Pfam DEAD/DEAH box helicase 133 310 IPR011545 GO:0003676|GO:0005524
Apr8g2262 702 CDD GUCT_RH7_like 550 635 - -
Apr8g2262 702 Pfam GUCT (NUC152) domain 543 638 IPR012562 GO:0003723|GO:0004386|GO:0005524
Apr8g2262 702 CDD SF2_C_DEAD 337 463 - -
Apr8g2262 702 Gene3D - 54 322 IPR027417 -
Apr8g2262 702 MobiDBLite consensus disorder prediction 639 702 - -
Apr8g2262 702 SMART ultradead3 128 340 IPR014001 -
Apr8g2262 702 Pfam Helicase conserved C-terminal domain 356 454 IPR001650 -
Apr8g2262 702 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 674 - -
Apr8g2262 702 Gene3D - 561 632 - -
Apr8g2262 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 493 IPR001650 -
Apr8g2262 702 CDD DEADc 120 317 - -
Apr8g2262 702 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 266 274 IPR000629 -
Apr8g2262 702 MobiDBLite consensus disorder prediction 85 108 - -
Apr8g2262 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 322 IPR014001 -
Apr8g2262 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 466 IPR027417 -
Apr8g2262 702 Gene3D - 334 560 IPR027417 -
Apr8g2262 702 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 36 674 - -
Apr8g2262 702 SMART helicmild6 377 454 IPR001650 -
Apr8g2262 702 Coils Coil 64 88 - -
Apr8g2262 702 MobiDBLite consensus disorder prediction 1 108 - -
Apr8g2262 702 SUPERFAMILY RNA-binding domain, RBD 547 630 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2262 Apr-Chr8 33048583 33053385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2262 124 490 Eukaryotic Initiation Factors Gene Family AT1G72730 30.108 1.87e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2262 K16911 - gmx:100805921 984.556