Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2256 ATGGCAGAAGAGAATCAACATATAAAATTGACAACTTCGGACAATGATGAAAAGAAGATCATTCGTAGGGAAGTTGAAAAACAAAGGAGGACCCAAATGGCTATTCTATGTGCATCACTCCGCTCTTCGCTCCCCTTTGAACTCATCAAGGGAAAGCGTTCGGCATCAGATCACATTGGCGAGGCGGTAAATTATATCCATTTTTTAAAGCAAAAGATTGATGCACTCGAAATCAAGAGAGATAGGCTCAAACAGATGATTAATCCATCAAGTTTAGTTGAAACTGGAACTGGAACTGAACCTCATGGTTCAGGTGCTTTAGTGAAGTGTGTCAATATCAGCCACATTCCATGGGGCGTGGAAATTGCCATATGTATTGGTTTGGAGGAGGGCAGTTCACGTTTATCAGTGTTAATGGAAATTCTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTTTTTCGACCCATACTAATGGAAGGATATTTCATACTATAAAGACAGAGGTGGAGAACTTGACAAGCCTTGATTTTGCTGCCTTGCAACACAAACTGGATCATGCTATCTTGTTATAA 573 0.4031 MAEENQHIKLTTSDNDEKKIIRREVEKQRRTQMAILCASLRSSLPFELIKGKRSASDHIGEAVNYIHFLKQKIDALEIKRDRLKQMINPSSLVETGTGTEPHGSGALVKCVNISHIPWGVEIAICIGLEEGSSRLSVLMEILLQEGCDVVSCFSTHTNGRIFHTIKTEVENLTSLDFAALQHKLDHAILL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2256 190 CDD bHLH_AtORG2_like 18 88 - -
Apr8g2256 190 Gene3D - 16 92 IPR036638 GO:0046983
Apr8g2256 190 Pfam Helix-loop-helix DNA-binding domain 22 69 IPR011598 GO:0046983
Apr8g2256 190 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 189 - -
Apr8g2256 190 Coils Coil 66 86 - -
Apr8g2256 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 90 IPR036638 GO:0046983
Apr8g2256 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 5 189 IPR015660 GO:0003700|GO:0006357
Apr8g2256 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2256 Apr-Chr8 32997109 32998368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2256 9 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 38.172 3.08e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g2256 HLH 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2256 - - ccaj:109790384 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0782 6 12209034 12209914 Apr8g2256 8 32997109 32998368 PCT