Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2255 ATGCCTTTTACAAGTCAAAGGGGAATTAAGGGCAAGCAGCGAGAAAAGTTACCTGATTGGGGAACAAAAGATTACAAGATTACCGCCATAGATGAAAACAAGAAGCATATGCATAGGGAGATCGAAAAACAAAGAAGACAAGAAATGGCCAAGCTATGCACCACCTTTAGATCTCTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAATTTCTGATCACATGCACGAGGGTACGAAATATATCAAGTACCTTCAAAATAAGGTGAAACAGTTGCAAGCCAAGAAGGATGAGTTAATGAAGTTGTCTAATTTAAGTCCTTTTGGCACTGATACTGGAAACTTTACTACTCATTCTCCAATACATGTCATTGTTCATCCTTGTCCAGGAGGTGTTCAGATTAAGTGTAGTTATAGCTTCAGGAAATATGTGTTTACTTTATCAAGTGTGCTAGACATAGTGGTTAAAGAAGGGCTTGATGTGGTCAACTGTACTTCCATTAAAACAGAAGATGGCAGGTTCATACACACTGTCCGATCAGAGGATCCACATATGATGACAGGGAGTAATTACACTGAACTGCAAAGAAATCTTATCGAAGCAATATCATCTTCAGGTTTGGAGGAGAGGCTGTCGGAACCTGAAAACTGA 651 0.3902 MPFTSQRGIKGKQREKLPDWGTKDYKITAIDENKKHMHREIEKQRRQEMAKLCTTFRSLLPLEYIKGKRSISDHMHEGTKYIKYLQNKVKQLQAKKDELMKLSNLSPFGTDTGNFTTHSPIHVIVHPCPGGVQIKCSYSFRKYVFTLSSVLDIVVKEGLDVVNCTSIKTEDGRFIHTVRSEDPHMMTGSNYTELQRNLIEAISSSGLEERLSEPEN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2255 216 Coils Coil 82 105 - -
Apr8g2255 216 Pfam Helix-loop-helix DNA-binding domain 34 86 IPR011598 GO:0046983
Apr8g2255 216 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 23 208 IPR015660 GO:0003700|GO:0006357
Apr8g2255 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 101 IPR036638 GO:0046983
Apr8g2255 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 85 IPR011598 GO:0046983
Apr8g2255 216 PANTHER TRANSCRIPTION FACTOR 23 208 - -
Apr8g2255 216 CDD bHLH_AtORG2_like 34 106 - -
Apr8g2255 216 Gene3D - 26 106 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2255 Apr-Chr8 32991466 32992482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2255 31 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 41.379 2.79e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g2255 HLH 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2255 - - gmx:100803786 320.087