Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2254 ATGCAATTGAAATGTTTCTGTTGTTTTCTTTGTGAAGCTGACCAAACCAAAATACAGAATGCCAACAACAAGAAAAATAAGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTCGTGCAACAAACAACTTTCATCAAGATAACAAGATTGGAGAGGGTGGATTCGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTCGAGATAGCAGTGAAGCGCTTGAAGGCTATGACCGCAAAGGCAGAGATGGAGTTTGCAGTAGAAGTGGAAGTACTTGGAAGGGTGAGGCATAAGAATTTGTTGGGCTTGCGTGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTTTATGATTACATGCCTAATCACAGCTTGCTCACCCATTTGCACGGTCAACTTGCTGCGGATTGTTTGCTAGATTGGCCTAAAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGTTTAGCGTATTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAGGCAAGCAATGTTCTTTTAGACCCTGAATTTCAAGCCAAGGTTGCTGATTTTGGTTTTGCTAAGTTGATACCAGAGGGAGTAAGCCATTTAACGACGAGGGTTAAAGGCACCCTTGGATATTTGGCGCCAGAGTACGCCATGTGGGGGAAGGTTTCTGAGAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTGTCAGTGCCAAGAAACCAATTGAGAAACTCCCTGGTGGAGTAAAAAGGGATATTGTTCAATGGGTCACACCACATGTTCAAAAGGGTAACTTCAAACACATTGTTGATCCAAAATTGAAGGGGCACTTTGATTTAGAGCAATTGAAATCTGTTGTCATGATAGCTATAAGGTGCACAGATAGTAGCCCAGAGAAGAGGCCTAGTATGATAGAGGTAGTGGAGTGGCTCAAGGGTGGCATAGGCAAGAGAATAAAAGAGGTACCAAATTTGAGTTACAAGAATGGAGAAGACGAATGTGATGAAAACTACGAAGAGATTAGAACAATGCGGTCCAAGTTGAAAGCACCAGGTGATAATCATCTTAAAATAAGATGA 1098 0.4199 MQLKCFCCFLCEADQTKIQNANNKKNKDYPWEIYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKAMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLAADCLLDWPKRMSIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDPEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLPGGVKRDIVQWVTPHVQKGNFKHIVDPKLKGHFDLEQLKSVVMIAIRCTDSSPEKRPSMIEVVEWLKGGIGKRIKEVPNLSYKNGEDECDENYEEIRTMRSKLKAPGDNHLKIR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2254 365 Gene3D Phosphorylase Kinase; domain 1 10 121 - -
Apr8g2254 365 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2254 365 Pfam Protein kinase domain 46 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2254 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Apr8g2254 365 PANTHER - 2 348 - -
Apr8g2254 365 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g2254 365 SUPERFAMILY Protein kinase-like (PK-like) 28 329 IPR011009 -
Apr8g2254 365 CDD STKc_IRAK 52 319 - -
Apr8g2254 365 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Apr8g2254 365 Gene3D Transferase(Phosphotransferase) domain 1 122 327 - -
Apr8g2254 365 PANTHER OS01G0750732 PROTEIN 2 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2254 Apr-Chr8 32975250 32976931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2254 27 339 Receptor kinase-like Gene Family AT5G45780 43.692 1.26e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Apr8g2254 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2254 - - gmx:100817283 661.373