Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2248 ATGGGAAGAGGGAGGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACTTTCTCAAAGCGAAGGAGTGGTTTGCTGAAGAAAGCTTTCGAGTTATCTGTGCTCTGCGATGCTGAAATCGCCCTCATCATCTTCTCTAGCCGTGGCAAACTTTTTCAGTATAGCAGCACTGACATTAACAGAATCATTGAGAAATATCGTCAATGCTGCTTCAACATGTCTAAGACTAGCGATATAGTTGAACTTCAATCACAGTGCTTATACCAAGAGCTTTTGATATTAAGAGTCAAGCATGAATCACTTGAACGGAGCCAAAGAAATTTTCTAGGAGAAGAACTTGAGCCACTTAGCTTGAAAGAATTGCAGAGTTTAGAGAAACAACTGGATAAAACGATTGCACAAGCTCGAAAGCATCAAACGCAGAAGCTGATGGCACGAATTGATGAATTATGCGAAAAGGTACAAAACCTGGAGGAGGTTAACAAACATTTGGAATCCAAGGAAAGAGATAAATGCACCCAGCAGATCTGTGAAGGTTCTACTAACTCGACCCCGTTTGTGTACAACAACAATCATATTCAAGTCAATCAGTTTCAATCTGGAACAACAGGATGGTTTCGGCGTCAACAAGCTGCTGCTTCAAAAGGAAAAGCAATAGATCGACACGGGGAGTGA 684 0.4167 MGRGRVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFNMSKTSDIVELQSQCLYQELLILRVKHESLERSQRNFLGEELEPLSLKELQSLEKQLDKTIAQARKHQTQKLMARIDELCEKVQNLEEVNKHLESKERDKCTQQICEGSTNSTPFVYNNNHIQVNQFQSGTTGWFRRQQAAASKGKAIDRHGE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2248 227 Coils Coil 121 170 - -
Apr8g2248 227 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr8g2248 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr8g2248 227 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 224 - -
Apr8g2248 227 PANTHER MADS BOX PROTEIN 1 224 - -
Apr8g2248 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr8g2248 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr8g2248 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr8g2248 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr8g2248 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr8g2248 227 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Apr8g2248 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr8g2248 227 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Apr8g2248 227 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr8g2248 227 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2248 Apr-Chr8 32913376 32917293 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2248 1 170 MADS-box Gene Family AT2G45650 52.941 2.12e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr8g2248 K-box 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2248 K09264 - gmx:100778860 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2248 8 32913376 32917293 Apr6g0774 6 12056547 12063619 PCT