Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2244 ATGGTGAGGGGAAAGATTCAAATGAAGAAAATTGAGAATGCTACAAGTCGTCAAGTGACATTTTCAAAGCGTCGAAATGGTCTTCTAAAGAAAGCTTACGAGCTATCAGTTCTTTGTGATGCTCAAGTAGCTGTGATAATCTTCTCACAGAGAGGACGGCTCTTTGAGTTCTCAAGTTCCGACATGACAAAGATTTTGGAACGACACCGGAAATATAGCAAAGATGTTCACACCAATAAGTTAAGAGACGAATATATCCAGCAACTGAAGTTTGATTCCGCAAGCATGGCAGAGAAGATTGAGCATCTTGAACTTTCTAGAAGGAAGCTGCTGGGACACAACTTGAGTCCTTGTTCTTATGGTGAACTCCAAGGAATTGAGGACCAGCTGCTGAGAAGTTTGCATAGTGTCAGACTGAGAAAGGCTGAACTATATATGGAGCAGATTGAGCACCTGCAATCCCTGGAGAGTAACTTGGTCAAAGAGAATGCCGAATTGAATGCAATGTGGGCGGAAAAGACATCCCAGCAGCAATGTGGTAGACACAAACAAGCAGAAGCTGAAGCAGCACCACGCTGTTCAAATAGCCAGAGTTTAGATGTGGAGACAGACTTATTTATTGGACTGCCAAAGCAGCGTTGA 642 0.4315 MVRGKIQMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIIFSQRGRLFEFSSSDMTKILERHRKYSKDVHTNKLRDEYIQQLKFDSASMAEKIEHLELSRRKLLGHNLSPCSYGELQGIEDQLLRSLHSVRLRKAELYMEQIEHLQSLESNLVKENAELNAMWAEKTSQQQCGRHKQAEAEAAPRCSNSQSLDVETDLFIGLPKQR* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2244 213 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Apr8g2244 213 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr8g2244 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr8g2244 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr8g2244 213 PANTHER MADS-BOX PROTEIN SOC1 1 210 - -
Apr8g2244 213 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Apr8g2244 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr8g2244 213 Pfam K-box region 87 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr8g2244 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr8g2244 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr8g2244 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr8g2244 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr8g2244 213 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Apr8g2244 213 PANTHER MADS BOX PROTEIN 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2244 Apr-Chr8 32877603 32886447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2244 1 213 MADS-box Gene Family AT4G22950 48.357 2.90e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr8g2244 K-box 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2244 - - gmx:100800580 294.278