Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2234 ATGTTTTCCATCAATCGTTTTTCCGATCCCCATCCGACGTCGCCGGTGTCGGTAGTTTCTCGGCCGGCGATGGCGGCGCTGTCGGACGAGGAGGTGTTTCTGGCGGCGAGTCACCCCAAGAAACGCGCGGGGAGGAAGAAGTTCAGGGAGACGCGTCACCCGGTGTACCGTGGGGTGAGAAAAAGGGACTCCGGCAAGTGGGTGTGCGAGGTGCGTGAACCCAATAAGAAGACGAGGATTTGGCTCGGGACCTTTCCCACTGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCTATAGCGCTTAGGGGAAGGTCCGCTTGCCTCAACTTCGAGGACTCCCCGTGGCGGTTGCCGGTACCGGCGACGGCGGATGCCAGGGACATACAGAAGGCAGCGGCAGAAGCGGCGGAGGCGTTCCGGCCTGGGATGGAATCGGAGACCGATGAGGGGAGGAAAGATAGTGAGTCGCCTGCGACGGTAGCGGCGGATGCGGCGGCGACGGAGCATGAAGAAGAAGAAGGGGCGGTGCCAGAGTTTCTGAGAAACATGGTGCTCATGTCCCCAATGCATTGCTTAGGAAGTGAGTATGGGTGTGATGACGTGGAATTTGGCGATGCTGAAGTTTCGTTGTGGAGTTATTCAATTTAA 651 0.596 MFSINRFSDPHPTSPVSVVSRPAMAALSDEEVFLAASHPKKRAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFEDSPWRLPVPATADARDIQKAAAEAAEAFRPGMESETDEGRKDSESPATVAADAAATEHEEEEGAVPEFLRNMVLMSPMHCLGSEYGCDDVEFGDAEVSLWSYSI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2234 216 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 216 - -
Apr8g2234 216 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Apr8g2234 216 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Apr8g2234 216 MobiDBLite consensus disorder prediction 142 157 - -
Apr8g2234 216 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Apr8g2234 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 216 IPR045277 GO:0003700
Apr8g2234 216 MobiDBLite consensus disorder prediction 139 176 - -
Apr8g2234 216 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Apr8g2234 216 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Apr8g2234 216 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Apr8g2234 216 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Apr8g2234 216 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2234 Apr-Chr8 32817544 32818947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2234 4 214 AP2-EREBP Transcription Factor Family AT5G51990 51.101 7.19e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g2234 AP2 3.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2234 - K09286 aprc:113872706 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0758 6 11835111 11836707 Apr8g2234 8 32817544 32818947 PCT