Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2230 ATGAGGCCTATTTTCTGCGGAAATTTCGAATACGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGGCGCTACGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGAGGCTGCGATTCGTGCTCTTGATCGGGTAGAATTTGGTCGCAAGGGACGCAGACTTCGCGTCGAATGGACAAAGCATGAACGTGGCATTAGAAGGCCTGCTGGTTCAAGAAGATCTTCAGCGAATGGGAGGCCATCAAAGACCCTGTTTGTAATTAATTTCGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTGCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGAGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGATAGGAGAAATGGATATAGCCCAGAGAGAGGCCGTGATCATCAACGTGATAGAAGCCGTGATGGAAGGCGGTCACCCAGTCCCTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGGGCCAGCCCATATCAAAGAGAGAGGAGCAGCCCTGACTATGGCCGTGGCCGTAGCCATAGCAGAAGCCCTCTTCGTAGAGAGCGAGCTAGTCCTGCTTATGGGCGTAGAAGCCCTAGTCCATATAGAAGAGAGAGGGACGGTTCTAACCCTGTTCGTGACTCCAGCCGCAGTCCTTACCACAAAGAGCATGAGAGAACTGACCATGGCATTTCTCCTTCCCGTAGTCCCAAAGGAAGAGAGAGGTCAAGCCCACAAAATGACCGTGGCTCTAGCCGTAGTCCTTATGATACTGTGAAGGCTAGCCCTGAAAATGGGCATGGCTCAGGACATAGTCCTGATGCAAAAGGAAATCCCAGCCCTTACAATGGTTATGGAGGGAGCCCAAATACTATGCCTGATCCCAGGGATAGTCCGAACTATGGTGGTCCTGAAAGTCCTATGCATGAAAGATACCGCAGCCAATCACCCCCTGCAGAAGAATGA 1113 0.487 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGIRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDHQRDRSRDGRRSPSPYRRERGSPDYGRGASPYQRERSSPDYGRGRSHSRSPLRRERASPAYGRRSPSPYRRERDGSNPVRDSSRSPYHKEHERTDHGISPSRSPKGRERSSPQNDRGSSRSPYDTVKASPENGHGSGHSPDAKGNPSPYNGYGGSPNTMPDPRDSPNYGGPESPMHERYRSQSPPAEE* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2230 370 MobiDBLite consensus disorder prediction 168 206 - -
Apr8g2230 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Apr8g2230 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Apr8g2230 370 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 210 - -
Apr8g2230 370 Gene3D - 1 86 IPR012677 -
Apr8g2230 370 Gene3D - 87 176 IPR012677 -
Apr8g2230 370 MobiDBLite consensus disorder prediction 220 296 - -
Apr8g2230 370 PANTHER BNAC08G47240D PROTEIN 4 210 - -
Apr8g2230 370 SUPERFAMILY RNA-binding domain, RBD 4 92 IPR035979 GO:0003676
Apr8g2230 370 CDD RRM1_AtRSp31_like 2 73 - -
Apr8g2230 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Apr8g2230 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Apr8g2230 370 MobiDBLite consensus disorder prediction 168 370 - -
Apr8g2230 370 SUPERFAMILY RNA-binding domain, RBD 80 172 IPR035979 GO:0003676
Apr8g2230 370 SMART rrm1_1 96 162 IPR000504 GO:0003723
Apr8g2230 370 SMART rrm1_1 3 70 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2230 Apr-Chr8 32762915 32767763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2230 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 23.121 2.41e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2230 K12893 - gmx:100796509 668.307