Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2222 ATGGATGGGGATCGTGACGAGTTGGGTACCGTGCACGAAGAGAATGTTGAGATTGGATCTCAGACATCGAACGAATTGGATTTGAATGTGGAGCAGAACTGTTGCAGCCCAAACATTTCTCATGCTGATGACTCTCATTCTGCTCCTCCTTCTGTAAATGTACTCAACACCAATAGGGTGTTGGGAATTGGTACAGAATTTGAGTCTGATGATCACGCATACAGATTCTATAACAACTATGCTAAATTGGTGGGTTTCAATGTTAGAAAAGATTGGATAAACAGGAGCAAGGTACATGGTCAAGTGGTGTCTAGGAAGTTTACCTGCTCCAAAGAGGGGTACCGTAGGAAAGACAAAAGAGATGTTAATGTGAAGAAACATAGGAAGGAAACAAGAACTGGCTGCTTGGCACATATGATCATCACTCGGCAACCAGATGGTAAATACCAGGTCACCCATTTCGAAGCACAACATAATCATGACAATATAAACCATAACAATGCTAACATGATAAACTTGCAAAATGAATTTAGTGTTGCTCAAGCTGTAGAAGCTGACTCAAACAATAATTTGGGACCTAAATCAAAGTCAGCATTAGATATGTTGAATAAAAAAATAAGTGCCCGTGAATCTCTCGATCAACTTTCAATGAATTATGACAATTACTTTCATTCTGAAAGGGAAAGAGATATGAGTGAAGGAGAAGCAGGGCGTCTGCTGGGCTATTTCCAAAGGCAACACTTTGAGAATCCAGCATTTTTTTATGCCATACAGCTCGATGTTGATGACAAGTTGTATGAGAAGACTTTGAAACACCTCAGCCATGTTGTTAAGGATGCTGAATCTTTTGGAAATGACCTACGGAGCAGTATTTATGACCCTAAGGACGAAGAAGAATTTACTAATGCTTGGAAGGCTATGCTAGAGAAGTATAGTCTCCAGCAAAATGAGTGGCTGAGATGGATGTATAGAGAAAGAGAGAAATGGGCCGTTATCTTTGGTCGAAATTCATTTTTTGTAGACATCAAAGGCTTTCATTTAGGTGAGATTTTGTCTGATAAGTTTAGAAGTTATCTAAATTCTGACCTTGATGTAGTTCATTTTTTTAAGCATTTTGAAAGGGTAGTAGATGAGCAACGTTATAAAGAAATAAAAGCTAGTGATGAAATGAGCAGGCGTTTGCCAAGGCTAATGGGTAATGTCATTTTGTTGAAGCATGCAAGTAATATTTATACTCCAAGAGCTTTTGAAGTATTTCAGCGAGGATATGAGAAGTCTTTAAATGTTCTTGTTTACCAACACTGCAGAAATGGATCATTGTTTGAGTACAAAACAAATACATTTGGGCGTACAAGACAATACTGTGTCACCTTCAATTCTTCAGATGATACAGTTGTCTGCAGTTGTTTGAAGTTTGAGCATGTTGGATTTTTGTGTAGCCATGCACTAAAAGTTCTTGACCATAAAAACATAAAAGTAGTTCCATCTCAGTATATCTTGAAGAGATGGACAAAAGATGCAAGATTGGGAAATCAGAGGGAGATTGGGCAATGTAAAATACAAGATAATCCTAGCCCTAAGATGATTGTTGCAAGCTGTTACAAAGATTTGTGCCACAGACTGCTCAAGTTATCAGCACGAGCCTCTGAATCTATTGAGGCTTATCAATTTGCCTCTAGGCGACTTGATGAAGTGATGGAAGGAGTGGAGAAAATCTTGACAGTAAAAGTTGAACAAGGTCAAGTTATCACATCAAGTAGTGTTGATGCAAATGCTTCAGAAAGTGAGCCTGCTGAGATCTTTCTGAATGGACATGCAATTGAGGATCGGGATGAAAGTAACAAAGTAAATGGAGAAAAAGACAGGAGAGCTACGTCAAACAGGGGCCATCTAACAACCACGACTTGTAATGGAACTGATTCTGATAGGATTTTGAATGTAGAAACGTCTTCCCCAAATACTGTTGTCTGCATTTCAAGCCCCTCATCTGCATATGTTTCATCTCAGTCTGCCACCCCAAATCCTATTCTGCAGGGTTTGTACAGTTTTGAGGCCAATCAAGTTGTTCACTGCTTGTATGAACAACCTAGTTTCGTGCTGGACCATCAATCTAATACTAACATGTTCCAACCATCTAACTTCCTTTCTAACCAACAGGAATCTCAAGACCAATCTCAACTACTGCAGGAACCTATAATCCAGAACACATACCACGAGTCCATGCCAAGCAGTAATCAGGGGATGGATCTTGACATCCAAAATCCACATCCGTCTTCATTCTTGCTGTATGACCATAGATACAGAAGTTCTGACTCCACATAA 2322 0.3936 MDGDRDELGTVHEENVEIGSQTSNELDLNVEQNCCSPNISHADDSHSAPPSVNVLNTNRVLGIGTEFESDDHAYRFYNNYAKLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRDVNVKKHRKETRTGCLAHMIITRQPDGKYQVTHFEAQHNHDNINHNNANMINLQNEFSVAQAVEADSNNNLGPKSKSALDMLNKKISARESLDQLSMNYDNYFHSERERDMSEGEAGRLLGYFQRQHFENPAFFYAIQLDVDDKLYEKTLKHLSHVVKDAESFGNDLRSSIYDPKDEEEFTNAWKAMLEKYSLQQNEWLRWMYREREKWAVIFGRNSFFVDIKGFHLGEILSDKFRSYLNSDLDVVHFFKHFERVVDEQRYKEIKASDEMSRRLPRLMGNVILLKHASNIYTPRAFEVFQRGYEKSLNVLVYQHCRNGSLFEYKTNTFGRTRQYCVTFNSSDDTVVCSCLKFEHVGFLCSHALKVLDHKNIKVVPSQYILKRWTKDARLGNQREIGQCKIQDNPSPKMIVASCYKDLCHRLLKLSARASESIEAYQFASRRLDEVMEGVEKILTVKVEQGQVITSSSVDANASESEPAEIFLNGHAIEDRDESNKVNGEKDRRATSNRGHLTTTTCNGTDSDRILNVETSSPNTVVCISSPSSAYVSSQSATPNPILQGLYSFEANQVVHCLYEQPSFVLDHQSNTNMFQPSNFLSNQQESQDQSQLLQEPIIQNTYHESMPSSNQGMDLDIQNPHPSSFLLYDHRYRSSDST* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2222 773 MobiDBLite consensus disorder prediction 738 753 - -
Apr8g2222 773 Pfam FAR1 DNA-binding domain 75 161 IPR004330 -
Apr8g2222 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 9 265 - -
Apr8g2222 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 265 639 - -
Apr8g2222 773 ProSiteProfiles Zinc finger SWIM-type profile. 454 490 IPR007527 GO:0008270
Apr8g2222 773 Pfam SWIM zinc finger 466 490 IPR007527 GO:0008270
Apr8g2222 773 MobiDBLite consensus disorder prediction 738 757 - -
Apr8g2222 773 MobiDBLite consensus disorder prediction 607 627 - -
Apr8g2222 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 265 IPR031052 GO:0006355
Apr8g2222 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 265 639 IPR031052 GO:0006355
Apr8g2222 773 MobiDBLite consensus disorder prediction 607 637 - -
Apr8g2222 773 SMART 26again6 465 492 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2222 Apr-Chr8 32678108 32682084 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr8g2222 FAR1 5.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2222 - K17604 gmx:100809803 798.505