Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2218 ATGCAAAATTCATCTTCTTTCTCCTTCCCAACTCAAAGGAAAATGGAAGGTCACGGTGAGATGGGTCTCATTGGGGAAAATTTTGATACTAGTTTGATGGGGAGAATGAGGGACGATGAGTATGAAAGCCGTTCTGGAAGTGATAACTTCGAAGGTGTATCTGGTGATGACCAGGATGGTGGTGATGATACGCCACAGAGGAAGAAGCGATACCACAGACACACTCCTCACCAAATTCAAGAGCTTGAGGCTTTTTTCAAGGAGTGTCCTCACCCTGATGAGAAGCAACGGTTGGATCTTAGTAAGAGGCTTGCGTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGAAGAACCCAAATGAAGACCCAGCTAGAACGCCATGAGAACATAATGCTTAGGCAGGAAAATGAGAAGCTTAGAGCTGAGAACAGTTTGATGAAGGAAGCCATGTCAAATCCAGTATGTAACAACTGTGGTGGCCCGGCTATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAGAATGCTCGACTAAAGGATGAATTGAACCGTATATGTGCCTTAGCAAACAAGTTTCTTGGCAAACCAATCTCATCATTGACCAGTCCCATGGCTCTTCCAACCTCAAACTCTGGTCTAGAACTTGGTATTGGAAGGAATGGGATTGGTGGTTCAAGCACTCTTGGCACTCCCTTGCCAATGGGACTTGATTTGGGAGATGGAGTGTTGGGCACCCAACCTACAATGTCAGGGATTAGACCACCGATGGGGTTGATGGGAAATGAGGTTCAGGTAGAGAGATCTATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTACTGAAGATGACTCAAGCAGATACCCCTCTTTGGATTAAGAGTTTGGATGGTGAGAAGGAAATATTGAACCATGAGGAGTATGCAAGGATGTTTTCTCCTTGTATTGGTGCAAAACCCACTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATTGTAATCATCAACAGTTTGGCACTCGTGGAAACTTTGATGGACGTGATGCATGCCGAGGTTCAATTGCTTTCTCCACTAGTTCCCGTTCGTCAAGTGAGATTCCTCCGGTTCTGTAAGCAACATGCAGAAGGTGTGTGGGCTGTGGTCGATGTTTCTATTGAGATTGGTCATGATGCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGTAGTCCACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAATGCTTGGCTATCCTCATGTCTTCTTCCATCTCTAGTGATGACCATACTGCACTGAGCCAAGCTGGTCGGAGAAGCATGTTGAAATTAGCACAACGAATGACTGGTAACTTCTGTTCAGGGGTTTGTGCTTCATCGGCTCGGAAGTGGGATAGCCTTCATATAGGGACTCTCGGTGATGACATGAGAGTGATGACTAGGAAGAACGTGGATGACCCTGGTGAGCCTCCAGGGATTGTTCTCAGTGCTGCAACTTCTGTTTGGATCCCGGTGTCACGGCAAAGGCTCTTTGATTTTCTGCGTGATGAACGACTCAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCAATGCAAGAGATGGTCCATATTGCCAAAGGTCAAGGACATGGAAACTGTGTTTCTCTACTTCGTGCTAATGCCGTTAATGCGAATGACAGCAGCATGCTGATTCTGCAAGAGACATGGATGGATGCATCATGCTCGGTGGTGGTGTATGCACCAGTTGACGTGCAATCCTTGAACGTGGTGATGAGTGGAGGAGATTCTGCATACGTTGCACTCTTGCCCTCAGGCTTTGCCATTCTTCCCGATGGACATAGCAACAACAGTTGCAATGGAACTTCGCAAAAGGGTGGTGCAAATGATGAAGGTGGGGGAAGCTTGCTCACAGTTGGGTTCCAAATTCTGGTGAATAGCCTCCCAACAGCTAAGCTCACAGTGGAATCAGTTGATACTGTGAATAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCTCTCAGAGTTGCATGA 2193 0.4637 MQNSSSFSFPTQRKMEGHGEMGLIGENFDTSLMGRMRDDEYESRSGSDNFEGVSGDDQDGGDDTPQRKKRYHRHTPHQIQELEAFFKECPHPDEKQRLDLSKRLALENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRAENSLMKEAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTSPMALPTSNSGLELGIGRNGIGGSSTLGTPLPMGLDLGDGVLGTQPTMSGIRPPMGLMGNEVQVERSMLIDLALAAMEELLKMTQADTPLWIKSLDGEKEILNHEEYARMFSPCIGAKPTGYVTEATRETGIVIINSLALVETLMDVMHAEVQLLSPLVPVRQVRFLRFCKQHAEGVWAVVDVSIEIGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTGNFCSGVCASSARKWDSLHIGTLGDDMRVMTRKNVDDPGEPPGIVLSAATSVWIPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHSNNSCNGTSQKGGANDEGGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKAALRVA* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2218 730 CDD homeodomain 67 125 IPR001356 GO:0003677
Apr8g2218 730 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 353 - -
Apr8g2218 730 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 352 728 - -
Apr8g2218 730 SUPERFAMILY Homeodomain-like 54 125 IPR009057 -
Apr8g2218 730 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Apr8g2218 730 SUPERFAMILY Bet v1-like 495 724 - -
Apr8g2218 730 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Apr8g2218 730 MobiDBLite consensus disorder prediction 1 75 - -
Apr8g2218 730 Pfam START domain 353 467 IPR002913 GO:0008289
Apr8g2218 730 Coils Coil 119 154 - -
Apr8g2218 730 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Apr8g2218 730 MobiDBLite consensus disorder prediction 32 46 - -
Apr8g2218 730 SUPERFAMILY Bet v1-like 270 467 - -
Apr8g2218 730 CDD START_ArGLABRA2_like 272 466 - -
Apr8g2218 730 Gene3D - 56 141 - -
Apr8g2218 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 353 IPR042160 -
Apr8g2218 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 352 728 IPR042160 -
Apr8g2218 730 SMART START_1 277 467 IPR002913 GO:0008289
Apr8g2218 730 ProSiteProfiles START domain profile. 268 470 IPR002913 GO:0008289
Apr8g2218 730 SMART HOX_1 66 129 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2218 Apr-Chr8 32646500 32652621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2218 15 727 Homeobox Transcription Factor Family AT3G61150 57.510 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr8g2218 START 9.4e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2218 K09338 - gmx:100785102 1340.48