Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2215 ATGGCTCCGCCGGTGGAACACAACGCTGACTCCACGGCTGGTGACTCTCAAAGATCCATTCCGACGCCGTTTCTAACCAAAACCTACCAGCTAGTCGACGATCACACAATTGACGACGTAATTTCTTGGAACGATGCTGGATCGTCCTTCATCGTCTGGAACCCTACCGTTTTTGCCAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACTTACGGATTCAGAAAAGTTGTGCCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGAAGAGGCGAGAAACGGCTTCTTTGTGAAATTCAGCGCCGGAAGATTCTCTCGACGTCGCCCACGGCATCTTCGAATGCCGGAGCAACTGCGACCTTAGCGGTTCCGTCCCCACGACCGCTATCTGCGATTCGGACGGTGAAACCGATCGTGTCGCCGTCGAACTCAGGGGAGGAGCAGGTGATGTCGTCGAACTCGTCGACGTCGAGAGCGCCGGCGGAGCTGTTGGACGAGAACGAGAGGCTGAGAAAGGAGAACTTTCAGTTGACGAAGGAATTGGAGGAGATGAGATCGCTCTGCAACAATATATTCAATCTAATGTCGAATTTCGCAAACGCTCAAGTGGATGGTAGTGTGCAAGATAGGGAGTGTGTTTCCATGGCGGCGAAGACGCTTCATTTTATGCCGGCGAAGTATTTCTCCGGCGAGGATGTGGCGGCGAGGGCGACGGAGGAGATGAACCCGAAGCTGTTTGGGGTGGCGATTGGTACAAAGCGATCGAGAGAGGAAAGACATGATACAGTATTGAGCCTGCAGCCGTTTCATGCGGACGTGAAACCTGAACAGTTAGATTTCCAGAGACTTAGCCAAAATGGAAGAACGCCGTGGCTGAATCACTGCCATAGAGAGAATCAGAGAGTGTGTAATTGA 948 0.5127 MAPPVEHNADSTAGDSQRSIPTPFLTKTYQLVDDHTIDDVISWNDAGSSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKILSTSPTASSNAGATATLAVPSPRPLSAIRTVKPIVSPSNSGEEQVMSSNSSTSRAPAELLDENERLRKENFQLTKELEEMRSLCNNIFNLMSNFANAQVDGSVQDRECVSMAAKTLHFMPAKYFSGEDVAARATEEMNPKLFGVAIGTKRSREERHDTVLSLQPFHADVKPEQLDFQRLSQNGRTPWLNHCHRENQRVCN* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2215 315 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2215 315 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2215 315 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2215 315 Coils Coil 178 198 - -
Apr8g2215 315 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 10 296 - -
Apr8g2215 315 MobiDBLite consensus disorder prediction 1 21 - -
Apr8g2215 315 Gene3D - 16 114 IPR036388 -
Apr8g2215 315 MobiDBLite consensus disorder prediction 152 171 - -
Apr8g2215 315 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Apr8g2215 315 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2215 315 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 296 IPR027725 -
Apr8g2215 315 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g2215 315 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2215 Apr-Chr8 32608413 32609616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2215 2 315 HSF AT5G62020 50.453 1.08e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr8g2215 HSF_DNA-bind 2.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2215 K09419 - gmx:100780987 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0732 6 11390614 11392378 Apr8g2215 8 32608413 32609616 PCT