Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2210 ATGGTTGACCCCGAACACTTCAACATTTACCCAATTCTCTTCTTTACGGTGTTTTCTTTGGGTGACGGCAAGGCACAGACAGCACAACCTTTACCCTCTCCGACTCTCTGGGATTACTCTTCCATTATCGTGGTAGTGGTAGCCTTCATTTTAGCGTTCTTGTTGGTGGCAGTGTTTTCAATTTTCCTCCATCGCTGTCTTCAGTCACACCTTACCGAAAGGACATGCACATGTTCGCATGGTAACATTCCCCCTGAAATACTTAGCACTTTCCCCATCTTCTCTCACTCTTCCCTCAACCACCTCAGAAGAGAACTAGAAGAAACCCTTCAATGCGCTATTTGCCTCAACGATTTCACTTTTCACGACACCCTCCGTCTTCTCCCTCATTGCAACCATGTCTTTCACCCTCCCTGCATCGATGCTTGGCTCTCTTCTCATGCCACATGTCCTGTTTGCCGCGCCAATCTCCTTCGCCCCCGCACCATGTTGTTATCCAGTGACCGCCGAGGAGGGTGA 519 0.4913 MVDPEHFNIYPILFFTVFSLGDGKAQTAQPLPSPTLWDYSSIIVVVVAFILAFLLVAVFSIFLHRCLQSHLTERTCTCSHGNIPPEILSTFPIFSHSSLNHLRRELEETLQCAICLNDFTFHDTLRLLPHCNHVFHPPCIDAWLSSHATCPVCRANLLRPRTMLLSSDRRGG* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2210 172 Pfam Ring finger domain 111 154 IPR001841 -
Apr8g2210 172 SUPERFAMILY RING/U-box 104 160 - -
Apr8g2210 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 160 IPR013083 -
Apr8g2210 172 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Apr8g2210 172 PANTHER RING FINGER DOMAIN-CONTAINING 25 159 - -
Apr8g2210 172 SMART ring_2 112 153 IPR001841 -
Apr8g2210 172 CDD RING-H2_PA-TM-RING 111 154 - -
Apr8g2210 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 25 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2210 Apr-Chr8 32588119 32588637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2210 8 157 Rapid Response to Elicitors AT3G05200 37.805 7.37e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2210 K10664 - aprc:113871817 349.362