Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2204 ATGGGGTGTCAGCCACTAGAAAAGGCAAAACCAAAACATAGGAAGGGGTTATGGTCACCTGAAGAAGACAATAAGCTCAGAAACCACATCCTTAAACATGGTCATGGTTGCTGGAGTTCTGTCCCCATTAAGGCAGGCTTACAAAGGAATGGAAAGAGTTGCAGACTAAGGTGGATTAACTATTTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAGGAAGAGGAAACAATCCTGACCCTTCACCACATGTTAGGCAACAAGTGGTCACAGATATCACAGCATTTGCCAGGAAGGACAGACAATGAGATTAAAAACTACTGGCATTCATATTTGAAAAAGAGAGTAGCCAAAGCTAAGGAAATGGAATCTCATAACCAAATTCAGTATGCTAGCTCAAGCTCAGACACCAAGGACTCTTCACCCTCTCTCCAAAAACTTGCAACTCAAGGCCCACAGAACTATAACTTCACCAAAGAGGCCCATCAAAGCTCCTTACCCAAATTGTTATTTGCTGAGTGGCTTTCTCTGGATCATGTACATGATGTGAACACTGCAAATTCAGTTGACTCTATGGTCTTGAGGAATGGATTTGATCAAAATTCAACTTTTCAAGATGCTACAATGCATGATATGTCAGAGGGACCCTTCGGTGAAGAGTATCATAAATGTCTAGCTAACATTTCAACCCCTGAAATGTTCAATTCACAGCTGAAGTTTGCAACTCAAATGGTGGAAAATGGCTTCATCCATTGTATACCTGGGGTTGACTTAAGTAGCAATTTCAGCATGAGCAATGATGCAATAATGTATGTATGA 822 0.4124 MGCQPLEKAKPKHRKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKRVAKAKEMESHNQIQYASSSSDTKDSSPSLQKLATQGPQNYNFTKEAHQSSLPKLLFAEWLSLDHVHDVNTANSVDSMVLRNGFDQNSTFQDATMHDMSEGPFGEEYHKCLANISTPEMFNSQLKFATQMVENGFIHCIPGVDLSSNFSMSNDAIMYV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2204 273 Gene3D - 69 144 - -
Apr8g2204 273 CDD SANT 18 62 IPR001005 -
Apr8g2204 273 PANTHER MYB DOMAIN PROTEIN 55 154 265 - -
Apr8g2204 273 PANTHER MYB DOMAIN PROTEIN 55 1 154 - -
Apr8g2204 273 MobiDBLite consensus disorder prediction 124 150 - -
Apr8g2204 273 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Apr8g2204 273 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Apr8g2204 273 Gene3D - 15 67 - -
Apr8g2204 273 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Apr8g2204 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr8g2204 273 MobiDBLite consensus disorder prediction 7 21 - -
Apr8g2204 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr8g2204 273 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Apr8g2204 273 MobiDBLite consensus disorder prediction 1 21 - -
Apr8g2204 273 SMART sant 67 115 IPR001005 -
Apr8g2204 273 SMART sant 14 64 IPR001005 -
Apr8g2204 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Apr8g2204 273 CDD SANT 70 113 IPR001005 -
Apr8g2204 273 PANTHER MYB TRANSCRIPTION FACTOR 154 265 - -
Apr8g2204 273 PANTHER MYB TRANSCRIPTION FACTOR 1 154 - -
Apr8g2204 273 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2204 Apr-Chr8 32541858 32545300 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2204 8 248 MYB Transcription Factor Family AT3G48920 46.124 8.95e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g2204 Myb_DNA-binding 8.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2204 K09422 - gmx:778167 490.345