Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2202 ATGGGTAAAGCACCCTGTTGTGAGAAACATGGAGTGAGAAGGGGGGCTTGGACTCCTGAAGAAGATGAAGCCTTGGTTGAGTACATCAAGAAGCATGGCCATGGAAGTTGGCGTACACTCCCCAAGCATGCAGGTCTCCTACGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGCATCAAGCGTGGTCCATTTACTAATGAAGAGGAAAATACTATTATTCAACTTCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTACCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACACATCTAAAGAAGCGCATTCTTCGGTCATGTCATTCCCAAAGAGCAAAACAGCCATGTATCCTTCCTGATCAAAGGATTGCGAAGTCTGAATCTCCCTCTACGCGACACATGGTACAATGGGAAAGTGCTAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCACTGCTCAATTCATGGTCAATGAATAACGCATGCCCTGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAGTCATTTCGCATGATCAAGGGAAAGGAAGGAATTGTGTGTCAAAGTCCTTTCTCACAACCATCATCCTCATCAAAGTTGGAGTCATGTTCAGATGTTTCATTGCAGGTGAAAAACACTGGAAATAGTTGTTACACTTACAATCCAATGCTTGAAGATGTCAACATGATTCAAGAACACACAAGTAGCTACAAACCAAAGCTTGAAGATGACACTGGTGGCTCAGAGTCAGGCAATTTTGAATTTCTCGACACTTCTGATTCTGCACTAAAGCACCTATTAGATATGCCTGATACTGATATAGGATTCTTGGAACACAATGACAATTTCCTGAATCTCCTTGACGGTACATGTGACTAA 930 0.4355 MGKAPCCEKHGVRRGAWTPEEDEALVEYIKKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTNEEENTIIQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRILRSCHSQRAKQPCILPDQRIAKSESPSTRHMVQWESARVEAEARLSMESSLLNSWSMNNACPDYFLQLWHSEVGQSFRMIKGKEGIVCQSPFSQPSSSSKLESCSDVSLQVKNTGNSCYTYNPMLEDVNMIQEHTSSYKPKLEDDTGGSESGNFEFLDTSDSALKHLLDMPDTDIGFLEHNDNFLNLLDGTCD* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2202 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr8g2202 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr8g2202 309 CDD SANT 69 112 IPR001005 -
Apr8g2202 309 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 298 - -
Apr8g2202 309 CDD SANT 16 61 IPR001005 -
Apr8g2202 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr8g2202 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr8g2202 309 Gene3D - 69 141 - -
Apr8g2202 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 298 - -
Apr8g2202 309 Gene3D - 14 66 - -
Apr8g2202 309 SMART sant 66 114 IPR001005 -
Apr8g2202 309 SMART sant 13 63 IPR001005 -
Apr8g2202 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr8g2202 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr8g2202 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2202 Apr-Chr8 32533187 32535121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2202 1 297 MYB Transcription Factor Family AT3G61250 53.548 1.24e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g2202 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2202 K09422 - gmx:100782075 526.168