Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2189 ATGGTGAGTCAAAGGCAGCGACTCGCTCGTAAGCGATTCAAAGCAGAACACCCTGAACTATTCCCCAAGGCAGAGCCAACTCCCCCAAAGGACCCCGACAAGAAGAAGAAAAAGAAGAAAAGGACCATCTTCAAGCGCAAAACCGCGGATTCAAAACAAAGCAATTTCCGAAAACACCCTTTCAGAGTCCCTGGCATGAAGCCTGGCGAAAGCTGTTTCATCTGCAAGGCCAAAGACCATATTGCAAAACTCTGTCCCGAAAAAGCTGAATGGGAGAAGAACAAGATATGTTTGCGATGTCGACGCCGCGGCCACAGAGCTAAGAACTGCCCTGAGGTGCAAGATGGCACCGCCAATGATGGCAAGTATTGCTATAATTGTGGGGACACTGGTCACTCACTCTCAAAATGTCCGCATCCTCTTCAAGAAGGAGGGACAAAGTTTGCGGAGTGCTTTGTCTGTAATCAACGTGGACACCTGAGTAAAAACTGTCCTCAAAATACTCATGGAATTTATCCAAAGGGTGGTTGTTGTAAAATATGTGGTGGTGTGACACATTTGGCAAAGGATTGTCCTGACAAAGGGAAGAAAGGATTGGTTGCTGCCAATAGACCTTTTGACGGATCAATAAGAACTGGAGAGAGGCCCAGTGGTAAGGTTACCAAATTTGGCAGCGGGGATGATATTGAGGATGACTTCATGGCTGATGACATGTGTAGTGGTGATAAGAACAAGTCAGCAAAGTCAAAAGATGGCCATGTAAAACCAAAGAAGAAGGGTCCTAAAGTTGTGAATTTTTAA 801 0.4582 MVSQRQRLARKRFKAEHPELFPKAEPTPPKDPDKKKKKKKRTIFKRKTADSKQSNFRKHPFRVPGMKPGESCFICKAKDHIAKLCPEKAEWEKNKICLRCRRRGHRAKNCPEVQDGTANDGKYCYNCGDTGHSLSKCPHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTHLAKDCPDKGKKGLVAANRPFDGSIRTGERPSGKVTKFGSGDDIEDDFMADDMCSGDKNKSAKSKDGHVKPKKKGPKVVNF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2189 266 Pfam Zinc knuckle 123 139 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 Pfam Zinc knuckle 151 166 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 ProSiteProfiles Zinc finger CCHC-type profile. 124 138 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 SMART c2hcfinal6 71 87 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 SMART c2hcfinal6 96 112 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 SMART c2hcfinal6 150 166 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 SMART c2hcfinal6 177 193 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 MobiDBLite consensus disorder prediction 207 226 - -
Apr8g2189 266 SUPERFAMILY Retrovirus zinc finger-like domains 119 168 IPR036875 GO:0003676|GO:0008270
Apr8g2189 266 ProSiteProfiles Zinc finger CCHC-type profile. 97 112 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 PANTHER OS04G0555800 PROTEIN 1 266 - -
Apr8g2189 266 Gene3D - 65 117 - -
Apr8g2189 266 Gene3D - 118 170 - -
Apr8g2189 266 MobiDBLite consensus disorder prediction 234 266 - -
Apr8g2189 266 SUPERFAMILY Retrovirus zinc finger-like domains 65 113 IPR036875 GO:0003676|GO:0008270
Apr8g2189 266 ProSiteProfiles Zinc finger CCHC-type profile. 151 166 IPR001878 GO:0003676|GO:0008270
Apr8g2189 266 MobiDBLite consensus disorder prediction 1 61 - -
Apr8g2189 266 MobiDBLite consensus disorder prediction 12 32 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2189 97 194 C2H2 Transcription Factor Family AT5G20220 31.034 1.88e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2189 - K17578 gmx:121174300 400.208