Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2180 ATGTCAGAATCTGAGGAAGAAAATTCAGACTTTGCTCCCAGGTCAAAGGCAACGGAGGAACCTGTGTGCACCATGGATTTCGATCTGGACTTAGAAAGTTCATGGCCTTTGGATCACATGTCTTTTGTTTCCAACCCCATGTCTCCTTTTCTCTTCTCAACTACCTCTGACCAACCTTACTCTCCTCTATGGGCTTTCTCTGATGGAGAAGATGATAGGCATGCTAGGCTTGCAGCTTCTCTACTGTTTTCAGGTGATTCAAATTCTATTATTGAAAAACCTGTGGAGAATGATGATAGCAAAAAACTTTTGCCACCCCCTGTGACACTGCCACCAGTAGAAAATTTGGATGGGTATTGTGTAATCAAGGAAAGGATGACACAAGCACTTCGTTACTTCAAAGAGTTGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCTGTGCGGAATGGTAATCGCTATGTGCTTACAACTTCGGGTCAACCCTTTGTTCTTGATCCACGCAGTAATGGACTCCATCAATACAGAACAGTCTCTCTGATGTACATGTTTTCTGTGGATGGGGAGAATGATGAAAATTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCCAATGTGCTGTATTATTCTAGTAAAGAATATCCACGTCGAGATCATGCTGAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCGTTACAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACCTAAAATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATTTGTAATGAAGGCCGCCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTAGTGTGCGAAACTCATAATTTACCTCTGGCCCAAACGTGGGTTCCCTGTAGGCATCGGAGTGTTTTGGCCCAAGGTGGTGGTCTAAAGAAAATCTGTTCCAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATCATAGATGCTCATTTGTGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACCTACAACAAGGTCAAGGGGTTGCTGGTAGGGCTTTTTTGTCCCACAGCATGTGCTACTGTGCAAACATTACCCAGTTCTGCAAAACTGATTACCCCTTAGTTCACTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTTCAGTCTGTTTACGAAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGATCTCAGACTTTAATGAACAGAAGACTTTATTAGGATCCATATTGGCAACAATGAAACAACATTTCCAGAGTCTTAAGATTGCTTCTGGCGTTGAACTTGAGGATGGTTTAATTGAAATTATTGAAGCAACAAATGAAAGAGTTCATTTGAGGCTTGAATGTATTCCAATTGCCCAATCTGTTAAATCACCTCCTGGAATTGATGCCTCACCAAATATAGGGGAGGAAATGCCACAGGATCCATCAGAACAACAAATAATGATGTACTGTAATAACATAAATGACGGAGGGAATCTTGGGCTTGGTGATAATACTGGTGGAAACATTGATCAGATGTCCTCCTTAGAGACTAAAAACATAAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGATGTTCTGCAACGTTATTTTGCTGGAAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGAATATCCCGTTGGCCATCTCGAAAGATAAACAAAGTTAACCGATCCCTGTCCAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTGAGCACAAGTCCACTTCCCATTGCTGTTGGTTCCTTTCCTGAACCTTCTACTCCAAACAAGCTCAGCCAGCCAGCCACATTAAGCATTAGACCATTGGAGCCTCATAATGATAAAGGTGGCTCTACACGGGAGGTTGGGAAAGAGCTACAAAGGACTAGAACTGGGAGCGGTTCAAGCGAAGATAGCACCACAAATCCTACTTCACATGGTTCATGCCAAGGCAGTCCCCCAAATGAAAGTTCACCTGTAAAGGATATATTCATTACTTCCATTAGTGAGCAATGTGCTGTTTTAAGGAAATCACCAGAGTCAACACTACAGCCAACTACTACGCAGAACCAATCAAATACTTATCCTTTGCCTGACTTGGTGGCAGCAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAACTTGTGTCCTTCAATAGCTGAGGCCATTTTGGAGGATCTGGTTCCAGAAGCATGTGGGACTAATCCTCCAGTTTCAGATTTGTCTCCTAAGCAAAGCGTGGATACTCCTAATAAAACAGTAACACCATTTGCGGCTAGGAAAGAAATGAAGACTCTTACTATCAAGGCAACATATAGAGAAGATATCATAAGATTTCGCGTCTCATTGACCTGTGGCATTGTGGAACTGAAAGAAGAAGTTGCTAAAAGACTGAAGTTAGAGGTGGGTACATTTGATATAAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGTTCCTGTGAGAGCTCAGGGGAGTGA 2856 0.4251 MSESEEENSDFAPRSKATEEPVCTMDFDLDLESSWPLDHMSFVSNPMSPFLFSTTSDQPYSPLWAFSDGEDDRHARLAASLLFSGDSNSIIEKPVENDDSKKLLPPPVTLPPVENLDGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPRSNGLHQYRTVSLMYMFSVDGENDENLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAEHYNVRGTLALPVFEPSLQSCVGVLELIMTSPKINYAPEVDKICKALEAVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAQGGGLKKICSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSHSMCYCANITQFCKTDYPLVHYALMFGLTSCFSVCLRSSHTGNDDYVLEFFLPPRISDFNEQKTLLGSILATMKQHFQSLKIASGVELEDGLIEIIEATNERVHLRLECIPIAQSVKSPPGIDASPNIGEEMPQDPSEQQIMMYCNNINDGGNLGLGDNTGGNIDQMSSLETKNIKKPLERKRGKTEKSISLDVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSFPEPSTPNKLSQPATLSIRPLEPHNDKGGSTREVGKELQRTRTGSGSSEDSTTNPTSHGSCQGSPPNESSPVKDIFITSISEQCAVLRKSPESTLQPTTTQNQSNTYPLPDLVAAELQEPFGGMLIEDAGSSKDLRNLCPSIAEAILEDLVPEACGTNPPVSDLSPKQSVDTPNKTVTPFAARKEMKTLTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2180 951 ProSiteProfiles PB1 domain profile. 856 938 IPR000270 GO:0005515
Apr8g2180 951 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 693 - -
Apr8g2180 951 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 693 950 - -
Apr8g2180 951 MobiDBLite consensus disorder prediction 693 707 - -
Apr8g2180 951 SMART PB1_new 856 938 IPR000270 GO:0005515
Apr8g2180 951 CDD PB1_NLP 857 937 IPR034891 -
Apr8g2180 951 Pfam RWP-RK domain 584 631 IPR003035 -
Apr8g2180 951 Pfam PB1 domain 857 937 IPR000270 GO:0005515
Apr8g2180 951 SUPERFAMILY CAD & PB1 domains 854 941 - -
Apr8g2180 951 Gene3D - 853 937 - -
Apr8g2180 951 ProSiteProfiles RWP-RK domain profile. 570 651 IPR003035 -
Apr8g2180 951 MobiDBLite consensus disorder prediction 667 740 - -
Apr8g2180 951 MobiDBLite consensus disorder prediction 708 740 - -
Apr8g2180 951 PANTHER PROTEIN NLP8 3 693 IPR045012 GO:0003700
Apr8g2180 951 PANTHER PROTEIN NLP8 693 950 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2180 Apr-Chr8 32311602 32316524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2180 177 951 NLP Transcription Factor Family AT1G64530 51.204 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Apr8g2180 PB1 6e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2180 - - gmx:100786118 1617.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0695 6 10576404 10582556 Apr8g2180 8 32311602 32316524 PCT