Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2178 ATGGCTCCTAAACAGCCTAGTACGGGTCTGTTTGTTGGATTGAACAAAGGTCACGTTGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATACGAGAAGTTGCTGGTTTCGCACCATATGAAAAACGTATAACTGAGTTACTGAAGGTTGGAAAAGATAAGAGGGCTCTCAAGGTTGCAAAGAGAAAGCTCGGAACGCATAAACGTGCAAAGAAGAAGCGTGAGGAGATGTCCAATGTTCTCAGGAAGATGAGGGCTGGTGGAGCTGGAGACAAGAAGAAATAA 333 0.4655 MAPKQPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2178 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Apr8g2178 110 MobiDBLite consensus disorder prediction 87 110 - -
Apr8g2178 110 Gene3D 60S ribosomal protein L36 1 108 IPR038097 -
Apr8g2178 110 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
Apr8g2178 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Apr8g2178 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Apr8g2178 110 MobiDBLite consensus disorder prediction 1 38 - -
Apr8g2178 110 MobiDBLite consensus disorder prediction 79 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2178 Apr-Chr8 32300167 32302650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2178 7 110 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 84.615 6.56e-59 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2178 K02920 - gmx:100526979 218.394